update rworkflows

neurogenomics · Oct 27, 2023 · 9275fc7 · 9275fc7
1 parent 51aaab2
commit 9275fc7
Showing 1 changed file with 7 additions and 5 deletions.
diff --git a/.github/workflows/rworkflows.yml b/.github/workflows/rworkflows.yml
@@ -4,14 +4,17 @@ name: rworkflows
     branches:
     - master
     - main
+    - devel
     - RELEASE_**
   pull_request:
     branches:
     - master
     - main
+    - devel
     - RELEASE_**
 jobs:
   rworkflows:
+    permissions: write-all
     runs-on: ${{ matrix.config.os }}
     name: ${{ matrix.config.os }} (${{ matrix.config.r }})
     container: ${{ matrix.config.cont }}
@@ -22,8 +25,8 @@ jobs:
         - os: ubuntu-latest
           bioc: devel
           r: auto
-          cont: bioconductor/bioconductor_docker:devel
-          rspm: https://packagemanager.rstudio.com/cran/__linux__/focal/release
+          cont: ghcr.io/bioconductor/bioconductor_docker:devel
+          rspm: https://packagemanager.rstudio.com/cran/__linux__/latest/release
         - os: macOS-latest
           bioc: release
           r: auto
@@ -46,10 +49,9 @@ jobs:
         run_pkgdown: ${{ true }}
         has_runit: ${{ false }}
         has_latex: ${{ false }}
-        GITHUB_TOKEN: ${{ secrets.PAT_GITHUB }}
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         run_docker: ${{ true }}
-        docker_user: bschilder
-        docker_org: neurogenomicslab
         DOCKER_TOKEN: ${{ secrets.DOCKER_TOKEN }}
         runner_os: ${{ runner.os }}
         cache_version: cache-v1
+        docker_registry: ghcr.io