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Bump to 1.7.2 and push to bioc
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bschilder committed Aug 30, 2023
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Package: orthogene
Type: Package
Title: Interspecies gene mapping
Version: 1.7.1
Version: 1.7.2
Authors@R:
c(
person(given = "Brian",
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6 changes: 6 additions & 0 deletions NEWS.md
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# orthogene 1.7.2

## Bug fixes

*

# orthogene 1.7.1

## New features
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4 changes: 2 additions & 2 deletions R/rotate_clades.R
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rotate_clades <- function(tr,
clades){

# clades <- list(c("homo sapiens","pan troglodytes"))
requireNamespace("ape")
requireNamespace("phytools")
# clades <- list(c("homo sapiens","pan troglodytes"))

for(tips in clades){
tips <- tips[tips %in% tr$tip.label]
if(length(tips)>1){
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14 changes: 7 additions & 7 deletions README.md
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================
<img src='https://github.com/neurogenomics/orthogene/raw/main/inst/hex/hex.png' title='Hex sticker for orthogene' height='300'><br>
[![](https://img.shields.io/badge/release%20version-1.4.2-green.svg)](https://www.bioconductor.org/packages/orthogene)
[![](https://img.shields.io/badge/download-222/month-green.svg)](https://bioconductor.org/packages/stats/bioc/orthogene)
[![](https://img.shields.io/badge/download-3320/total-green.svg)](https://bioconductor.org/packages/stats/bioc/orthogene)
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[![](https://img.shields.io/badge/download-3771/total-green.svg)](https://bioconductor.org/packages/stats/bioc/orthogene)
[![download](http://www.bioconductor.org/shields/downloads/release/orthogene.svg)](https://bioconductor.org/packages/stats/bioc/orthogene)
[![License:
GPL-3](https://img.shields.io/badge/license-GPL--3-blue.svg)](https://cran.r-project.org/web/licenses/GPL-3)
<br>
[![](https://img.shields.io/badge/devel%20version-1.7.1-black.svg)](https://github.com/neurogenomics/orthogene)
[![](https://img.shields.io/badge/devel%20version-1.7.2-black.svg)](https://github.com/neurogenomics/orthogene)
[![](https://img.shields.io/github/languages/code-size/neurogenomics/orthogene.svg)](https://github.com/neurogenomics/orthogene)
[![](https://img.shields.io/github/last-commit/neurogenomics/orthogene.svg)](https://github.com/neurogenomics/orthogene/commits/main)
<br> [![R build
status](https://github.com/neurogenomics/orthogene/workflows/rworkflows/badge.svg)](https://github.com/neurogenomics/orthogene/actions)
[![](https://codecov.io/gh/neurogenomics/orthogene/branch/main/graph/badge.svg)](https://codecov.io/gh/neurogenomics/orthogene)
[![](https://codecov.io/gh/neurogenomics/orthogene/branch/main/graph/badge.svg)](https://app.codecov.io/gh/neurogenomics/orthogene)
<br>
<a href='https://app.codecov.io/gh/neurogenomics/orthogene/tree/main' target='_blank'><img src='https://codecov.io/gh/neurogenomics/orthogene/branch/main/graphs/icicle.svg' title='Codecov icicle graph' width='200' height='50' style='vertical-align: top;'></a>
<h4>
Authors: <i>Brian Schilder</i>
</h4>
<h4>
README updated: <i>Jul-14-2023</i>
README updated: <i>Aug-30-2023</i>
</h4>

# Intro
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## [77] blob_1.2.4 parallel_4.2.1
## [79] lattice_0.21-8 hms_1.1.3
## [81] knitr_1.43 pillar_1.9.0
## [83] igraph_1.4.3 ggpubr_0.6.0
## [83] igraph_1.5.0.1 ggpubr_0.6.0
## [85] RUnit_0.4.32 ggsignif_0.6.4
## [87] rworkflows_0.99.9 stats4_4.2.1
## [87] rworkflows_0.99.12 stats4_4.2.1
## [89] gprofiler2_0.2.1 crul_1.4.0
## [91] XML_3.99-0.14 glue_1.6.2
## [93] evaluate_0.21 ggfun_0.0.9
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