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2 changes: 1 addition & 1 deletion .buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 5612c70f8794646354c77397adf035bf
config: 9dc2501bce5111257bf46e662605b035
tags: 645f666f9bcd5a90fca523b33c5a78b7
4 changes: 2 additions & 2 deletions _modules/index.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Overview: module code &#8212; NXSTools 4.16.1 documentation</title>
<title>Overview: module code &#8212; NXSTools 4.17.0 documentation</title>
<link rel="stylesheet" type="text/css" href="../_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="../_static/bootstrap-sphinx.css" />
<script data-url_root="../" id="documentation_options" src="../_static/documentation_options.js"></script>
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</button>
<a class="navbar-brand" href="../index.html">
NXSTools</a>
<span class="navbar-text navbar-version pull-left"><b>4.16</b></span>
<span class="navbar-text navbar-version pull-left"><b>4.17</b></span>
</div>

<div class="collapse navbar-collapse nav-collapse">
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2 changes: 1 addition & 1 deletion _static/documentation_options.js
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var DOCUMENTATION_OPTIONS = {
URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
VERSION: '4.16.1',
VERSION: '4.17.0',
LANGUAGE: 'en',
COLLAPSE_INDEX: false,
BUILDER: 'html',
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6 changes: 4 additions & 2 deletions genindex.html
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
<title>Index &#8212; NXSTools 4.16.1 documentation</title>
<title>Index &#8212; NXSTools 4.17.0 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="_static/bootstrap-sphinx.css" />
<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
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</button>
<a class="navbar-brand" href="index.html">
NXSTools</a>
<span class="navbar-text navbar-version pull-left"><b>4.16</b></span>
<span class="navbar-text navbar-version pull-left"><b>4.17</b></span>
</div>

<div class="collapse navbar-collapse nav-collapse">
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<li><a href="nxstools.html#nxstools.nxsconfig.ConfigServer.showCmd">showCmd() (nxstools.nxsconfig.ConfigServer method)</a>
</li>
<li><a href="nxstools.html#nxstools.filewriter.FTDataFilter.shuffle">shuffle (nxstools.filewriter.FTDataFilter property)</a>
</li>
<li><a href="nxstools.html#nxstools.nxsfileinfo.GroupMetadata.singlelisttype">singlelisttype (nxstools.nxsfileinfo.GroupMetadata attribute)</a>
</li>
<li><a href="nxstools.html#nxstools.filewriter.FTField.size">size (nxstools.filewriter.FTField property)</a>

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8 changes: 4 additions & 4 deletions index.html
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<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.19: https://docutils.sourceforge.io/" />

<title>Welcome to nxstoolss documentation! &#8212; NXSTools 4.16.1 documentation</title>
<title>Welcome to nxstools&#39;s documentation! &#8212; NXSTools 4.17.0 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="_static/bootstrap-sphinx.css" />
<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
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</button>
<a class="navbar-brand" href="#">
NXSTools</a>
<span class="navbar-text navbar-version pull-left"><b>4.16</b></span>
<span class="navbar-text navbar-version pull-left"><b>4.17</b></span>
</div>

<div class="collapse navbar-collapse nav-collapse">
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<ul class="dropdown-menu localtoc"
role="menu"
aria-labelledby="dLabelLocalToc"><ul>
<li><a class="reference internal" href="#">Welcome to nxstoolss documentation!</a><ul>
<li><a class="reference internal" href="#">Welcome to nxstools's documentation!</a><ul>
<li><a class="reference internal" href="#introduction">Introduction</a></li>
<li><a class="reference internal" href="#installation">Installation</a><ul>
<li><a class="reference internal" href="#from-sources">From sources</a></li>
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<div class="body col-md-12 content" role="main">

<section id="welcome-to-nxstools-s-documentation">
<h1>Welcome to nxstoolss documentation!<a class="headerlink" href="#welcome-to-nxstools-s-documentation" title="Permalink to this heading"></a></h1>
<h1>Welcome to nxstools's documentation!<a class="headerlink" href="#welcome-to-nxstools-s-documentation" title="Permalink to this heading"></a></h1>
<p><a class="reference external" href="https://github.com/nexdatas/nxstools/actions"><img alt="" src="https://github.com/nexdatas/nxstools/actions/workflows/tests.yml/badge.svg" /></a>
<a class="reference external" href="https://nexdatas.github.io/nxstools/index.html"><img alt="" src="https://img.shields.io/badge/Documentation-webpages-ADD8E6.svg" /></a>
<a class="reference external" href="https://pypi.python.org/pypi/nxstools"><img alt="" src="https://img.shields.io/pypi/v/nxstools.svg" /></a>
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84 changes: 42 additions & 42 deletions nxscollect.html
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<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" /><meta name="generator" content="Docutils 0.19: https://docutils.sourceforge.io/" />

<title>nxcollect &#8212; NXSTools 4.16.1 documentation</title>
<title>nxcollect &#8212; NXSTools 4.17.0 documentation</title>
<link rel="stylesheet" type="text/css" href="_static/pygments.css" />
<link rel="stylesheet" type="text/css" href="_static/bootstrap-sphinx.css" />
<script data-url_root="./" id="documentation_options" src="_static/documentation_options.js"></script>
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<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="nxsconfig" href="nxsconfig.html" />
<link rel="prev" title="Welcome to nxstoolss documentation!" href="index.html" />
<link rel="prev" title="Welcome to nxstools&#39;s documentation!" href="index.html" />
<meta charset='utf-8'>
<meta http-equiv='X-UA-Compatible' content='IE=edge,chrome=1'>
<meta name='viewport' content='width=device-width, initial-scale=1.0, maximum-scale=1'>
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</button>
<a class="navbar-brand" href="index.html">
NXSTools</a>
<span class="navbar-text navbar-version pull-left"><b>4.16</b></span>
<span class="navbar-text navbar-version pull-left"><b>4.17</b></span>
</div>

<div class="collapse navbar-collapse nav-collapse">
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<li>
<a href="index.html" title="Previous Chapter: Welcome to nxstoolss documentation!"><span class="glyphicon glyphicon-chevron-left visible-sm"></span><span class="hidden-sm hidden-tablet">&laquo; Welcome to nx...</span>
<a href="index.html" title="Previous Chapter: Welcome to nxstools's documentation!"><span class="glyphicon glyphicon-chevron-left visible-sm"></span><span class="hidden-sm hidden-tablet">&laquo; Welcome to nx...</span>
</a>
</li>
<li>
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</dd>
<dt><kbd><span class="option">-c <var>COMPRESSION</var></span>, <span class="option">--compression <var>COMPRESSION</var></span></kbd></dt>
<dd><p>deflate compression rate from 0 to 9 (default: 2) or
&lt;filterid&gt;:opt1,opt2, e.g. -c 32008:0,2 for
&lt;filterid&gt;:opt1,opt2,... e.g. -c 32008:0,2 for
bitshuffle with lz4</p>
</dd>
<dt><kbd><span class="option">-p <var>PATH</var></span>, <span class="option">--path <var>PATH</var></span></kbd></dt>
Expand All @@ -244,18 +244,18 @@ <h2>Synopsis for nxscollect append<a class="headerlink" href="#synopsis-for-nxsc
</dd>
<dt><kbd><span class="option">-i <var>INPUTFILES</var></span>, <span class="option">--input_files <var>INPUTFILES</var></span></kbd></dt>
<dd><p>input data files defined with a pattern or separated
by ‘,’ e.g.scan_%05d.tif:0:100</p>
by ',' e.g.'scan_%05d.tif:0:100'</p>
</dd>
<dt><kbd><span class="option">--separator <var>SEPARATOR</var></span></kbd></dt>
<dd><p>input data files separator (default: ‘,’)</p>
<dd><p>input data files separator (default: ',')</p>
</dd>
<dt><kbd><span class="option">--dtype <var>DATATYPE</var></span></kbd></dt>
<dd><p>datatype of input data - only for raw data, e.g.
uint8</p>
'uint8'</p>
</dd>
<dt><kbd><span class="option">--shape <var>SHAPE</var></span></kbd></dt>
<dd><p>shape of input data - only for raw data, e.g.
[4096,2048]</p>
'[4096,2048]'</p>
</dd>
<dt><kbd><span class="option">-s</span>, <span class="option">--skip_missing</span></kbd></dt>
<dd><p>skip missing files</p>
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<dd><p>show this help message and exit</p>
</dd>
<dt><kbd><span class="option">-t <var>DTYPE</var></span>, <span class="option">--dtype <var>DTYPE</var></span></kbd></dt>
<dd><p>datatype of the VDS field, e.g. uint8</p>
<dd><p>datatype of the VDS field, e.g. 'uint8'</p>
</dd>
<dt><kbd><span class="option">-s <var>SHAPE</var></span>, <span class="option">--shape <var>SHAPE</var></span></kbd></dt>
<dd><p>shape of the VDS field, e.g. [U,4096,2048] or
U,4096,2048 where U means span along the field</p>
<dd><p>shape of the VDS field, e.g. '[U,4096,2048]' or
U,4096,2048 where U means span along the field'</p>
</dd>
<dt><kbd><span class="option">-f <var>FILLVALUE</var></span>, <span class="option">--fill-value <var>FILLVALUE</var></span></kbd></dt>
<dd><p>fill value for the gaps, default is 0</p>
</dd>
<dt><kbd><span class="option">-e <var>TARGETFIELDS</var></span>, <span class="option">--target-fields <var>TARGETFIELDS</var></span></kbd></dt>
<dd><p>external fields with their NeXus file paths defined
with a pattern or separated by ‘,’
e.g.scan_123/lambda_%05d.nxs://entry/data/<a class="reference external" href="data:0:3">data:0:3</a></p>
with a pattern or separated by ','
e.g.'scan_123/lambda_%05d.nxs://entry/data/<a class="reference external" href="data:0:3">data:0:3</a>'</p>
</dd>
<dt><kbd><span class="option">--separator <var>SEPARATOR</var></span></kbd></dt>
<dd><p>input data files separator (default: ‘,’)</p>
<dd><p>input data files separator (default: ',')</p>
</dd>
<dt><kbd><span class="option">-p <var>SHAPES</var></span>, <span class="option">--shapes <var>SHAPES</var></span></kbd></dt>
<dd><p>shapes in the VDS layout hyperslab for the
corresponding target fields with coordinates sepatated
by ‘,’ and different fields separated by ‘;’, ‘:’ or
spaces e.g.,,;,300,;,600,0 where an empty coordinate
by ',' and different fields separated by ';', ':' or
spaces e.g.',,;,300,;,600,0' where an empty coordinate
means 0</p>
</dd>
<dt><kbd><span class="option">-o <var>OFFSETS</var></span>, <span class="option">--offsets <var>OFFSETS</var></span></kbd></dt>
<dd><p>offsets in the VDS layout hyperslab for the
corresponding target fields with coordinates sepatated
by ‘,’ and different fields separated by ‘;’, ‘:’ or
spaces e.g.,,;,300,;,600,0 where an empty coordinate
by ',' and different fields separated by ';', ':' or
spaces e.g.',,;,300,;,600,0' where an empty coordinate
means 0</p>
</dd>
<dt><kbd><span class="option">-b <var>BLOCKS</var></span>, <span class="option">--blocks <var>BLOCKS</var></span></kbd></dt>
<dd><p>block sizes in the VDS layout hyperslab for the
corresponding target fields with coordinates sepatated
by ‘,’ and different fields separated by ‘;’, ‘:’ or
spaces e.g. ,256,512;,256,512;,256,512 where an
by ',' and different fields separated by ';', ':' or
spaces e.g. ',256,512;,256,512;,256,512' where an
empty coordinate means 1</p>
</dd>
<dt><kbd><span class="option">-c <var>COUNTS</var></span>, <span class="option">--counts <var>COUNTS</var></span></kbd></dt>
<dd><p>count numbers in the VDS layout hyperslabfor the
corresponding target fields with coordinates sepatated
by ‘,’ and different fields separated by ‘;’, ‘:’ or
spaces e.g. ,1,1;,1,1;,1,1 where an empty coordinate
by ',' and different fields separated by ';', ':' or
spaces e.g. ',1,1;,1,1;,1,1' where an empty coordinate
means span along the layout</p>
</dd>
<dt><kbd><span class="option">-d <var>STRIDES</var></span>, <span class="option">--strides <var>STRIDES</var></span></kbd></dt>
<dd><p>stride sizes in the VDS layout hyperslabfor the
corresponding target fields with coordinates sepatated
by ‘,’ and different fields separated by ‘;’, ‘:’ or
spaces e.g. ,,;,,;,, where an empty coordinate means
by ',' and different fields separated by ';', ':' or
spaces e.g. ',,;,,;,,' where an empty coordinate means
1</p>
</dd>
<dt><kbd><span class="option">-l <var>SLICES</var></span>, <span class="option">--slices <var>SLICES</var></span></kbd></dt>
<dd><p>mapping slices in the VDS layoutfor the corresponding
target fields with coordinates sepatated by ‘,’ and
different fields separated by ‘;’ or spaces e.g.
:,0:50,: :,50:100,: where U means span along the
target fields with coordinates sepatated by ',' and
different fields separated by ';' or spaces e.g.
':,0:50,: :,50:100,:' where U means span along the
layout</p>
</dd>
<dt><kbd><span class="option">-P <var>TARGETSHAPES</var></span>, <span class="option">--target-shapes <var>TARGETSHAPES</var></span></kbd></dt>
<dd><p>field shapes with coordinates sepatated by ‘,’ and
different fields separated by ‘;’, ‘:’ or spaces
e.g.,,;,300,;,600,0</p>
<dd><p>field shapes with coordinates sepatated by ',' and
different fields separated by ';', ':' or spaces
e.g.',,;,300,;,600,0'</p>
</dd>
<dt><kbd><span class="option">-O <var>TARGETOFFSETS</var></span>, <span class="option">--target-offsets <var>TARGETOFFSETS</var></span></kbd></dt>
<dd><p>offsets in the view hyperslab of target fieldswith
coordinates sepatated by ‘,’ and different fields
separated by ‘;’, ‘:’ or spaces e.g.,,;,300,;,600,0
coordinates sepatated by ',' and different fields
separated by ';', ':' or spaces e.g.',,;,300,;,600,0'
where an empty coordinate means 0</p>
</dd>
<dt><kbd><span class="option">-B <var>TARGETBLOCKS</var></span>, <span class="option">--target-blocks <var>TARGETBLOCKS</var></span></kbd></dt>
<dd><p>block sizes in the view hyperslab of target fields
with coordinates sepatated by ‘,’ and different fields
separated by ‘;’, ‘:’ or spaces e.g.
,256,512;,256,512;,256,512 where an empty coordinate
with coordinates sepatated by ',' and different fields
separated by ';', ':' or spaces e.g.
',256,512;,256,512;,256,512' where an empty coordinate
means 1</p>
</dd>
<dt><kbd><span class="option">-C <var>TARGETCOUNTS</var></span>, <span class="option">--target-counts <var>TARGETCOUNTS</var></span></kbd></dt>
<dd><p>count numbers in the view hyperslab of target fields
with coordinates sepatated by ‘,’ and different fields
separated by ‘;’, ‘:’ or spaces e.g. ,1,1;,1,1;,1,1
with coordinates sepatated by ',' and different fields
separated by ';', ':' or spaces e.g. ',1,1;,1,1;,1,1'
where an empty coordinate means span along the layout</p>
</dd>
<dt><kbd><span class="option">-D <var>TARGETSTRIDES</var></span>, <span class="option">--target-strides <var>TARGETSTRIDES</var></span></kbd></dt>
<dd><p>stride sizes numbers in the view hyperslab of target
fields with coordinates sepatated by ‘,’ and different
fields separated by ‘;’, ‘:’ or spaces e.g. ,,;,,;,,
fields with coordinates sepatated by ',' and different
fields separated by ';', ':' or spaces e.g. ',,;,,;,,'
where an empty coordinate means 1</p>
</dd>
<dt><kbd><span class="option">-L <var>TARGETSLICES</var></span>, <span class="option">--target-slices <var>TARGETSLICES</var></span></kbd></dt>
<dd><p>view slices of target fields with coordinates
sepatated by ‘,’ and different fields separated by ‘;’
or spaces e.g. :,0:50,: :,0:50,: where U means span
sepatated by ',' and different fields separated by ';'
or spaces e.g. ':,0:50,: :,0:50,:' where U means span
along the layout</p>
</dd>
<dt><kbd><span class="option">-r</span>, <span class="option">--replace-nexus-file</span></kbd></dt>
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