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Ben made me do this (+ nf-schema migration) #334

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Ben made me do this (+ nf-schema migration)

Ben made me do this (+ nf-schema migration) #334

Triggered via pull request September 3, 2024 13:54
@nvnieuwknvnieuwk
synchronize #98
ben-made-me-do-this
Status Failure
Total duration 3m 34s
Artifacts –

ci.yml

on: pull_request
Matrix: test_all
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63 errors and 21 warnings
Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.04.0
Process completed with exit code 1.
Run nf-test with bam_prepare_samtools-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_variant_calling_manta-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_sv_calling-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_variant_calling_qdnaseq-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_repeat_estimation_expansionhunter-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_variant_calling_wisecondorx-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_variant_calling_smoove-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with vcf_annotate_vep_annotsv_vcfanno-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_variant_calling_delly-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with pipeline_duplicates-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with pipeline_families-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with pipeline_repeats-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with pipeline_sv-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with pipeline_cnv-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with vcf_concat_bcftools-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with vcf_merge_family_jasmine-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with vcf_merge_callers_jasmine-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with vcf_merge_family_jasmine-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with vcf_merge_family_jasmine-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with bam_variant_calling_smoove-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_variant_calling_smoove-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with bam_variant_calling_smoove-24.04.0
The operation was canceled.
Run nf-test with bam_repeat_estimation_expansionhunter-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_repeat_estimation_expansionhunter-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_families-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with pipeline_families-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with bam_variant_calling_delly-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_variant_calling_delly-24.04.0
The operation was canceled.
Run nf-test with bam_variant_calling_delly-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with bam_cnv_calling-latest-everything
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_cnv_calling-latest-everything
The operation was canceled.
Run nf-test with bam_cnv_calling-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with bam_cnv_calling-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_cnv_calling-24.04.0
The operation was canceled.
Run nf-test with bam_cnv_calling-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_concat_bcftools-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with vcf_concat_bcftools-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with bam_variant_calling_wisecondorx-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_variant_calling_wisecondorx-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_sv-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with pipeline_sv-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_merge_callers_jasmine-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with vcf_merge_callers_jasmine-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_cnv-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with pipeline_cnv-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_cnv-24.04.0
The operation was canceled.
Run nf-test with bam_variant_calling_qdnaseq-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_variant_calling_qdnaseq-24.04.0
The operation was canceled.
Run nf-test with bam_variant_calling_qdnaseq-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with bam_prepare_samtools-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_prepare_samtools-24.04.0
The operation was canceled.
Run nf-test with bam_prepare_samtools-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_repeats-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with pipeline_repeats-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_repeats-24.04.0
The operation was canceled.
Run nf-test with bam_sv_calling-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_sv_calling-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with bam_variant_calling_manta-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with bam_variant_calling_manta-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with pipeline_duplicates-24.04.0
The job was canceled because "_24_04_0_vcf_annotate_vep" failed.
Run nf-test with pipeline_duplicates-24.04.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.04.0
The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3, actions/upload-artifact@v3. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_annotate_vep_annotsv_vcfanno-24.04.0
No files were found with the provided path: .nf-test/. No artifacts will be uploaded.
Run nf-test with vcf_merge_family_jasmine-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with bam_variant_calling_smoove-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with bam_repeat_estimation_expansionhunter-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_families-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with bam_variant_calling_delly-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with bam_cnv_calling-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with bam_cnv_calling-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_concat_bcftools-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with bam_variant_calling_wisecondorx-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_sv-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with vcf_merge_callers_jasmine-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_cnv-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with bam_variant_calling_qdnaseq-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with bam_prepare_samtools-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_repeats-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with bam_sv_calling-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with bam_variant_calling_manta-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
Run nf-test with pipeline_duplicates-24.04.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23