Update/fix annotsv + add HPO terms #313
nvnieuwkAnnotations
36 errors and 72 warnings
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Run nf-test with vcf_concat_bcftools-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_prepare_samtools-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_smoove-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_merge_callers_jasmine-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_qdnaseq-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_manta-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_repeat_estimation_expansionhunter-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_merge_family_jasmine-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_repeats-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_wisecondorx-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_cnv_calling-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_cnv_calling-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_sv_calling-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_duplicates-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_delly-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_prepare_samtools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_sv-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_cnv-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_manta-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_repeat_estimation_expansionhunter-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_wisecondorx-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_qdnaseq-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_smoove-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_repeats-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_concat_bcftools-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_variant_calling_delly-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_merge_callers_jasmine-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_duplicates-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_merge_family_jasmine-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with bam_sv_calling-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_sv-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_families-23.10.0
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_cnv-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with pipeline_families-latest-everything
❌ Failed to create checks using the provided token. (HttpError: Resource not accessible by integration)
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Run nf-test with vcf_concat_bcftools-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with vcf_concat_bcftools-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_prepare_samtools-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_prepare_samtools-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_smoove-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_variant_calling_smoove-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_merge_callers_jasmine-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with vcf_merge_callers_jasmine-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_qdnaseq-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_variant_calling_qdnaseq-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_manta-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_variant_calling_manta-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_repeat_estimation_expansionhunter-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_repeat_estimation_expansionhunter-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_merge_family_jasmine-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with vcf_merge_family_jasmine-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_repeats-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with pipeline_repeats-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_wisecondorx-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_variant_calling_wisecondorx-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_cnv_calling-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_cnv_calling-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_cnv_calling-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_cnv_calling-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_sv_calling-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_sv_calling-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_duplicates-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with pipeline_duplicates-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_delly-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_variant_calling_delly-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_prepare_samtools-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_prepare_samtools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_sv-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with pipeline_sv-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_cnv-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with pipeline_cnv-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_manta-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_variant_calling_manta-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_repeat_estimation_expansionhunter-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_repeat_estimation_expansionhunter-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_wisecondorx-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_variant_calling_wisecondorx-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_qdnaseq-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_variant_calling_qdnaseq-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_smoove-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_variant_calling_smoove-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_repeats-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with pipeline_repeats-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_concat_bcftools-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with vcf_concat_bcftools-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_variant_calling_delly-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_variant_calling_delly-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_merge_callers_jasmine-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with vcf_merge_callers_jasmine-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_duplicates-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with pipeline_duplicates-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_merge_family_jasmine-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with vcf_merge_family_jasmine-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with bam_sv_calling-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with bam_sv_calling-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_sv-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with pipeline_sv-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_families-23.10.0
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with pipeline_families-23.10.0
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_cnv-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with pipeline_cnv-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with vcf_annotate_vep_annotsv_vcfanno-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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Run nf-test with pipeline_families-latest-everything
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: nf-core/setup-nextflow@v1, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
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Run nf-test with pipeline_families-latest-everything
⚠️ This usually indicates insufficient permissions. More details: https://github.com/mikepenz/action-junit-report/issues/23
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