Merge pull request #58 from nf-core/patch

Quick Version Release 1.0.4 - Pipeline issue arose in 1.0.3 where only one sample was processed
nf-core · Jun 26, 2023 · 09a5015 · 09a5015
2 parents 09bdf9a + 621bef1
commit 09a5015
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,6 +3,18 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
+## v1.0.4 - [2023-06-26]
+
+### `Added`
+
+### `Fixed`
+
+- Bug that the pipeline only runs with one sample when Picard Markduplicates is used
+
+### `Dependencies`
+
+### `Deprecated`
+
 ## v1.0.3 - [2023-05-26]
 
 ### `Added`

diff --git a/nextflow.config b/nextflow.config
@@ -261,7 +261,7 @@ manifest {
     description     = """Pipeline for the identification of circular DNAs"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=22.10.1'
-    version         = '1.0.3'
+    version = '1.0.4'
     doi             = '10.5281/zenodo.7712010'
 }
 

diff --git a/workflows/circdna.nf b/workflows/circdna.nf
@@ -23,7 +23,7 @@ if (!(params.input_format == "FASTQ" | params.input_format == "BAM")) {
 }
 
 // Modify fasta channel to include meta data
-ch_fasta_meta = ch_fasta.map{ it -> [[id:it[0].baseName], it] }
+ch_fasta_meta = ch_fasta.map{ it -> [[id:it[0].baseName], it] }.collect()
 
 branch = params.circle_identifier.split(",")
 run_circexplorer2 = ("circexplorer2" in branch)