Merge pull request #42 from nf-core/general-modules-update

General modules update
nf-core · Oct 8, 2024 · 4b056b2 · 4b056b2
2 parents 20be423 + 7294a7f
commit 4b056b2
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diff --git a/docs/images/nf-core-createtaxdb_logo_light_tax.svg b/docs/images/nf-core-createtaxdb_logo_light_tax.svg
diff --git a/modules.json b/modules.json
@@ -7,73 +7,73 @@
                 "nf-core": {
                     "bracken/build": {
                         "branch": "master",
-                        "git_sha": "dcbe6e77bc6cc0843ce93e6c7bd884d65c215984",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["fasta_build_add_kraken2_bracken"]
                     },
                     "cat/cat": {
                         "branch": "master",
-                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "centrifuge/build": {
                         "branch": "master",
-                        "git_sha": "01f0dc3888a90fbbd6fac8e23112a5825762418e",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "custom/dumpsoftwareversions": {
                         "branch": "master",
-                        "git_sha": "8ec825f465b9c17f9d83000022995b4f7de6fe93",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "diamond/makedb": {
                         "branch": "master",
-                        "git_sha": "b29f6beb86d1d24d680277fb1a3f4de7b8b8a92c",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "gunzip": {
                         "branch": "master",
-                        "git_sha": "3a5fef109d113b4997c9822198664ca5f2716208",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "kaiju/mkfmi": {
                         "branch": "master",
-                        "git_sha": "7365564c402cbd01e9407810730efd10039997a3",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "kraken2/add": {
                         "branch": "master",
-                        "git_sha": "ca87ad032a62f025f0c373facacef2df0c5411b2",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["fasta_build_add_kraken2_bracken"]
                     },
                     "kraken2/build": {
                         "branch": "master",
-                        "git_sha": "ca87ad032a62f025f0c373facacef2df0c5411b2",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["fasta_build_add_kraken2_bracken"]
                     },
                     "krakenuniq/build": {
                         "branch": "master",
-                        "git_sha": "e3857325a14ef6e50e33c104c0a3be0ccaabbeb1",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"],
                         "patch": "modules/nf-core/krakenuniq/build/krakenuniq-build.diff"
                     },
                     "malt/build": {
                         "branch": "master",
-                        "git_sha": "7d3bac628092d1aead36960c4b6ae41302a9f797",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "b7ebe95761cd389603f9cc0e0dc384c0f663815a",
+                        "git_sha": "b8d36829fa84b6e404364abff787e8b07f6d058c",
                         "installed_by": ["modules"]
                     },
                     "pigz/compress": {
                         "branch": "master",
-                        "git_sha": "0eab94fc1e48703c1b0a8704bd665f554905c39d",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     },
                     "unzip": {
                         "branch": "master",
-                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
                         "installed_by": ["modules"]
                     }
                 }
@@ -82,7 +82,7 @@
                 "nf-core": {
                     "fasta_build_add_kraken2_bracken": {
                         "branch": "master",
-                        "git_sha": "9758e4dedd5788369e61b57e7d6f4751e682b17a",
+                        "git_sha": "c60c14b285b89bdd0607e371417dadb80385ad6e",
                         "installed_by": ["subworkflows"]
                     },
                     "utils_nextflow_pipeline": {

diff --git a/modules/nf-core/bracken/build/environment.yml b/modules/nf-core/bracken/build/environment.yml
diff --git a/modules/nf-core/bracken/build/meta.yml b/modules/nf-core/bracken/build/meta.yml
diff --git a/modules/nf-core/bracken/build/tests/main.nf.test b/modules/nf-core/bracken/build/tests/main.nf.test
diff --git a/modules/nf-core/bracken/build/tests/main.nf.test.snap b/modules/nf-core/bracken/build/tests/main.nf.test.snap
diff --git a/modules/nf-core/cat/cat/environment.yml b/modules/nf-core/cat/cat/environment.yml