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Run nf-test #5052

Triggered via merge group January 25, 2025 16:38
@jfy133jfy133
⁠ eb4d9c3
Status Failure
Total duration 6m 55s
Artifacts –

nf-test.yml

on: merge_group
nf-test-changes
3m 3s
nf-test-changes
Matrix: nf-test
confirm-pass
0s
confirm-pass
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32 errors and 5 warnings
Test | conda | 14
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/fe05a4bc4975634bbbc53bf22dca46b9/work/92/5128bfe2bca610a9afa5860f9007b3/test/delnodes.dmp'
Test | singularity | 14
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/e05df5d64c8f0d646b7227dada0642a6/work/4f/5ece4738a0f726b34594815143e5d8/test/delnodes.dmp'
Test | conda | 1
File was unable to be removed Error: EACCES: permission denied, rmdir '/opt/actions-runner/_work/modules/modules/.nf-test/tests/f00c6ab76a09b1ac646cc0aa93dd07af/work/f4/3d8e7dc7326dbd548f027b86a44035/db-light/amrfinderplus-db'
Test | docker_self_hosted | 13
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/cb7f4cdf01b9ece0ff7af3f69330c70a/work/be/3b6ed9d5b95e058d1acb8841bfa2a1/test/citations.dmp'
Test | conda | 15
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/e05df5d64c8f0d646b7227dada0642a6/work/4f/5ece4738a0f726b34594815143e5d8/test/citations.dmp'
Test | docker_self_hosted | 15
File was unable to be removed Error: EACCES: permission denied, rmdir '/opt/actions-runner/_work/modules/modules/.nf-test/tests/f00c6ab76a09b1ac646cc0aa93dd07af/work/f4/3d8e7dc7326dbd548f027b86a44035/db-light/amrfinderplus-db'
Test | singularity | 15
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/fe05a4bc4975634bbbc53bf22dca46b9/work/92/5128bfe2bca610a9afa5860f9007b3/test/citations.dmp'
Test | conda | 2
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/cb7f4cdf01b9ece0ff7af3f69330c70a/work/be/3b6ed9d5b95e058d1acb8841bfa2a1/test/citations.dmp'
Test | singularity | 2
File was unable to be removed Error: EACCES: permission denied, rmdir '/opt/actions-runner/_work/modules/modules/.nf-test/tests/f00c6ab76a09b1ac646cc0aa93dd07af/work/f4/3d8e7dc7326dbd548f027b86a44035/db-light/amrfinderplus-db'
Test | docker_self_hosted | 2
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/e05df5d64c8f0d646b7227dada0642a6/work/4f/5ece4738a0f726b34594815143e5d8/test/citations.dmp'
Test | singularity | 3
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/fe05a4bc4975634bbbc53bf22dca46b9/work/92/5128bfe2bca610a9afa5860f9007b3/test/citations.dmp'
Test | conda | 3
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/cb7f4cdf01b9ece0ff7af3f69330c70a/work/be/3b6ed9d5b95e058d1acb8841bfa2a1/test/citations.dmp'
Test | conda | 5
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/fe05a4bc4975634bbbc53bf22dca46b9/work/92/5128bfe2bca610a9afa5860f9007b3/test/citations.dmp'
Test | docker_self_hosted | 3
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/e05df5d64c8f0d646b7227dada0642a6/work/4f/5ece4738a0f726b34594815143e5d8/test/delnodes.dmp'
Test | conda | 4
File was unable to be removed Error: EACCES: permission denied, rmdir '/opt/actions-runner/_work/modules/modules/.nf-test/tests/f00c6ab76a09b1ac646cc0aa93dd07af/work/f4/3d8e7dc7326dbd548f027b86a44035/db-light/amrfinderplus-db'
Test | docker_self_hosted | 4
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/cb7f4cdf01b9ece0ff7af3f69330c70a/work/be/3b6ed9d5b95e058d1acb8841bfa2a1/test/citations.dmp'
Test | singularity | 4
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/e05df5d64c8f0d646b7227dada0642a6/work/4f/5ece4738a0f726b34594815143e5d8/test/citations.dmp'
Test | docker_self_hosted | 5
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/fe05a4bc4975634bbbc53bf22dca46b9/work/92/5128bfe2bca610a9afa5860f9007b3/test/citations.dmp'
Test | docker_self_hosted | 6
File was unable to be removed Error: EACCES: permission denied, rmdir '/opt/actions-runner/_work/modules/modules/.nf-test/tests/f00c6ab76a09b1ac646cc0aa93dd07af/work/f4/3d8e7dc7326dbd548f027b86a44035/db-light/amrfinderplus-db'
Test | conda | 6
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/cb7f4cdf01b9ece0ff7af3f69330c70a/work/be/3b6ed9d5b95e058d1acb8841bfa2a1/test/citations.dmp'
Test | singularity | 6
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/e05df5d64c8f0d646b7227dada0642a6/work/4f/5ece4738a0f726b34594815143e5d8/test/citations.dmp'
Test | singularity | 5
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/fe05a4bc4975634bbbc53bf22dca46b9/work/92/5128bfe2bca610a9afa5860f9007b3/test/citations.dmp'
Test | singularity | 7
File was unable to be removed Error: EACCES: permission denied, rmdir '/opt/actions-runner/_work/modules/modules/.nf-test/tests/f00c6ab76a09b1ac646cc0aa93dd07af/work/f4/3d8e7dc7326dbd548f027b86a44035/db-light/amrfinderplus-db'
Test | docker_self_hosted | 7
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/cb7f4cdf01b9ece0ff7af3f69330c70a/work/be/3b6ed9d5b95e058d1acb8841bfa2a1/test/citations.dmp'
Test | conda | 7
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/e05df5d64c8f0d646b7227dada0642a6/work/4f/5ece4738a0f726b34594815143e5d8/test/citations.dmp'
Test | conda | 8
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/fe05a4bc4975634bbbc53bf22dca46b9/work/92/5128bfe2bca610a9afa5860f9007b3/test/citations.dmp'
Test | conda | 9
File was unable to be removed Error: EACCES: permission denied, rmdir '/opt/actions-runner/_work/modules/modules/.nf-test/tests/f00c6ab76a09b1ac646cc0aa93dd07af/work/f4/3d8e7dc7326dbd548f027b86a44035/db-light/amrfinderplus-db'
Test | singularity | 8
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/cb7f4cdf01b9ece0ff7af3f69330c70a/work/be/3b6ed9d5b95e058d1acb8841bfa2a1/test/citations.dmp'
Test | docker_self_hosted | 8
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/e05df5d64c8f0d646b7227dada0642a6/work/4f/5ece4738a0f726b34594815143e5d8/test/citations.dmp'
Test | docker_self_hosted | 9
File was unable to be removed Error: EACCES: permission denied, unlink '/opt/actions-runner/_work/modules/modules/.nf-test/tests/fe05a4bc4975634bbbc53bf22dca46b9/work/92/5128bfe2bca610a9afa5860f9007b3/test/citations.dmp'
Test | singularity | 9
File was unable to be removed Error: EACCES: permission denied, rmdir '/opt/actions-runner/_work/modules/modules/.nf-test/tests/f00c6ab76a09b1ac646cc0aa93dd07af/work/f4/3d8e7dc7326dbd548f027b86a44035/db-light/amrfinderplus-db'
confirm-pass
Process completed with exit code 1.
nf-test-changes
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
Test | conda | 14
Unable to clean or reset the repository. The repository will be recreated instead.
Test | singularity | 14
Unable to clean or reset the repository. The repository will be recreated instead.
Test | docker_self_hosted | 13
Unable to clean or reset the repository. The repository will be recreated instead.
confirm-pass
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636