bump wisecondorx modules (#5506)

nf-core · Apr 19, 2024 · da7894d · da7894d
1 parent 9758e4d
commit da7894d
Show file tree

Hide file tree

Showing 8 changed files with 32 additions and 32 deletions.
diff --git a/modules/nf-core/wisecondorx/convert/main.nf b/modules/nf-core/wisecondorx/convert/main.nf
@@ -5,8 +5,8 @@ process WISECONDORX_CONVERT {
     // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions.
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/wisecondorx:1.2.5--pyh5e36f6f_0':
-        'biocontainers/wisecondorx:1.2.5--pyh5e36f6f_0' }"
+        'https://depot.galaxyproject.org/singularity/wisecondorx:1.2.6--pyhdfd78af_0':
+        'biocontainers/wisecondorx:1.2.6--pyhdfd78af_0' }"
 
     input:
     tuple val(meta), path(bam), path(bai)
@@ -24,7 +24,7 @@ process WISECONDORX_CONVERT {
     def args = task.ext.args ?: ''
     def prefix = task.ext.prefix ?: "${meta.id}"
     def reference = fasta ? "--reference ${fasta}" : ""
-    def VERSION = '1.2.5' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
+    def VERSION = '1.2.6' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
 
     """
     WisecondorX convert \\
@@ -41,7 +41,7 @@ process WISECONDORX_CONVERT {
 
     stub:
     def prefix = task.ext.prefix ?: "${meta.id}"
-    def VERSION = '1.2.5' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
+    def VERSION = '1.2.6' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
 
     """
     touch ${prefix}.npz

diff --git a/modules/nf-core/wisecondorx/convert/tests/main.nf.test.snap b/modules/nf-core/wisecondorx/convert/tests/main.nf.test.snap
@@ -12,7 +12,7 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,917a47772d6f722fe520f900827fae01"
+                    "versions.yml:md5,867fac789f15d6e2484e372df42dc1fa"
                 ],
                 "npz": [
                     [
@@ -24,15 +24,15 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,917a47772d6f722fe520f900827fae01"
+                    "versions.yml:md5,867fac789f15d6e2484e372df42dc1fa"
                 ]
             }
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.02.0"
         },
-        "timestamp": "2024-03-18T16:57:23.88568683"
+        "timestamp": "2024-04-19T15:44:04.304677987"
     },
     "sarscov2 - bam, bai, [], []": {
         "content": [
@@ -47,7 +47,7 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,917a47772d6f722fe520f900827fae01"
+                    "versions.yml:md5,867fac789f15d6e2484e372df42dc1fa"
                 ],
                 "npz": [
                     [
@@ -59,15 +59,15 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,917a47772d6f722fe520f900827fae01"
+                    "versions.yml:md5,867fac789f15d6e2484e372df42dc1fa"
                 ]
             }
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.02.0"
         },
-        "timestamp": "2024-03-18T16:58:57.092145603"
+        "timestamp": "2024-04-19T15:43:48.33030357"
     },
     "sarscov2 - bam, bai - stub": {
         "content": [
@@ -82,7 +82,7 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,917a47772d6f722fe520f900827fae01"
+                    "versions.yml:md5,867fac789f15d6e2484e372df42dc1fa"
                 ],
                 "npz": [
                     [
@@ -94,14 +94,14 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,917a47772d6f722fe520f900827fae01"
+                    "versions.yml:md5,867fac789f15d6e2484e372df42dc1fa"
                 ]
             }
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.02.0"
         },
-        "timestamp": "2024-03-18T16:59:20.717480551"
+        "timestamp": "2024-04-19T15:44:10.372144798"
     }
 }
diff --git a/modules/nf-core/wisecondorx/gender/main.nf b/modules/nf-core/wisecondorx/gender/main.nf
@@ -5,8 +5,8 @@ process WISECONDORX_GENDER {
     // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions.
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/wisecondorx:1.2.5--pyh5e36f6f_0':
-        'biocontainers/wisecondorx:1.2.5--pyh5e36f6f_0' }"
+        'https://depot.galaxyproject.org/singularity/wisecondorx:1.2.6--pyhdfd78af_0':
+        'biocontainers/wisecondorx:1.2.6--pyhdfd78af_0' }"
 
     input:
     tuple val(meta), path(npz)
@@ -20,7 +20,7 @@ process WISECONDORX_GENDER {
     task.ext.when == null || task.ext.when
 
     script:
-    def VERSION = '1.2.5' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
+    def VERSION = '1.2.6' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
 
     """
     WisecondorX gender \\
@@ -34,7 +34,7 @@ process WISECONDORX_GENDER {
     """
 
     stub:
-    def VERSION = '1.2.5' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
+    def VERSION = '1.2.6' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
 
     """
     echo male

diff --git a/modules/nf-core/wisecondorx/gender/tests/main.nf.test.snap b/modules/nf-core/wisecondorx/gender/tests/main.nf.test.snap
@@ -12,7 +12,7 @@
                     ]
                 ],
                 "1": [
-                    "versions.yml:md5,ee69f2b69802dc591fe3cb26e94a17bc"
+                    "versions.yml:md5,0c391140d8b20d0447ada5c507ab86cf"
                 ],
                 "gender": [
                     [
@@ -24,14 +24,14 @@
                     ]
                 ],
                 "versions": [
-                    "versions.yml:md5,ee69f2b69802dc591fe3cb26e94a17bc"
+                    "versions.yml:md5,0c391140d8b20d0447ada5c507ab86cf"
                 ]
             }
         ],
         "meta": {
             "nf-test": "0.8.4",
             "nextflow": "24.02.0"
         },
-        "timestamp": "2024-03-19T11:09:38.223832474"
+        "timestamp": "2024-04-19T15:44:22.430941739"
     }
 }
diff --git a/modules/nf-core/wisecondorx/newref/main.nf b/modules/nf-core/wisecondorx/newref/main.nf
@@ -5,8 +5,8 @@ process WISECONDORX_NEWREF {
     // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions.
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/wisecondorx:1.2.5--pyh5e36f6f_0':
-        'biocontainers/wisecondorx:1.2.5--pyh5e36f6f_0' }"
+        'https://depot.galaxyproject.org/singularity/wisecondorx:1.2.6--pyhdfd78af_0':
+        'biocontainers/wisecondorx:1.2.6--pyhdfd78af_0' }"
 
     input:
     tuple val(meta), path(inputs)
@@ -21,7 +21,7 @@ process WISECONDORX_NEWREF {
     script:
     def args = task.ext.args ?: ''
     def prefix = task.ext.prefix ?: "${meta.id}"
-    def VERSION = '1.2.5' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
+    def VERSION = '1.2.6' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
 
     inputs.each { if("${it}" == "${prefix}.npz") error "${it} has the same name as the output file, set prefix in module configuration to disambiguate!"}
 
@@ -41,7 +41,7 @@ process WISECONDORX_NEWREF {
 
     stub:
     def prefix = task.ext.prefix ?: "${meta.id}"
-    def VERSION = '1.2.5' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
+    def VERSION = '1.2.6' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
 
     inputs.each { if("${it}" == "${prefix}.npz") error "${it} has the same name as the output file, set prefix in module configuration to disambiguate!"}
 

diff --git a/modules/nf-core/wisecondorx/newref/tests/main.nf.test.snap b/modules/nf-core/wisecondorx/newref/tests/main.nf.test.snap
@@ -2,7 +2,7 @@
     "homo_sapiens - [npz]": {
         "content": [
             [
-                "versions.yml:md5,76cc7a445641380597ca00dfb5722c92"
+                "versions.yml:md5,187e7748e6ae48d77e1e43b428de5f32"
             ],
             [
                 [
@@ -17,6 +17,6 @@
             "nf-test": "0.8.4",
             "nextflow": "24.02.0"
         },
-        "timestamp": "2024-03-19T10:39:17.199036914"
+        "timestamp": "2024-04-19T15:43:40.252060275"
     }
 }
diff --git a/modules/nf-core/wisecondorx/predict/main.nf b/modules/nf-core/wisecondorx/predict/main.nf
@@ -5,8 +5,8 @@ process WISECONDORX_PREDICT {
     // WARN: Version information not provided by tool on CLI. Please update version string below when bumping container versions.
     conda "${moduleDir}/environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/wisecondorx:1.2.5--pyh5e36f6f_0':
-        'biocontainers/wisecondorx:1.2.5--pyh5e36f6f_0' }"
+        'https://depot.galaxyproject.org/singularity/wisecondorx:1.2.6--pyhdfd78af_0':
+        'biocontainers/wisecondorx:1.2.6--pyhdfd78af_0' }"
 
     input:
     tuple val(meta), path(npz)
@@ -32,7 +32,7 @@ process WISECONDORX_PREDICT {
 
     def plots = args.contains("--plot") ? "mv ${prefix}.plots/* ." : ""
 
-    def VERSION = '1.2.5' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
+    def VERSION = '1.2.6' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
 
     """
     WisecondorX predict \\
@@ -53,7 +53,7 @@ process WISECONDORX_PREDICT {
     stub:
     def args = task.ext.args ?: '--bed --plot'
     def prefix = task.ext.prefix ?: "${meta.id}"
-    def VERSION = '1.2.5' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
+    def VERSION = '1.2.6' // WARN: Version information not provided by tool on CLI. Please update this string when bumping container versions.
 
     def bed = args.contains("--bed") ? "touch ${prefix}_aberrations.bed && touch ${prefix}_bins.bed && touch ${prefix}_chr_statistics.txt && touch ${prefix}_segments.bed" : ""
     def plot = args.contains("--plot") ? "touch genome_wide.png && touch chr22.png && touch chr1.png" : ""

diff --git a/modules/nf-core/wisecondorx/predict/tests/main.nf.test.snap b/modules/nf-core/wisecondorx/predict/tests/main.nf.test.snap
@@ -2,7 +2,7 @@
     "sarscov2 - npz, reference, []": {
         "content": [
             [
-                "versions.yml:md5,b23cede31804c7e833df43254983c387"
+                "versions.yml:md5,e51bd81606241794d14e3da4c1b93ebe"
             ],
             [
                 [
@@ -60,6 +60,6 @@
             "nf-test": "0.8.4",
             "nextflow": "24.02.0"
         },
-        "timestamp": "2024-03-19T11:20:04.150585302"
+        "timestamp": "2024-04-19T15:43:32.282429683"
     }
 }