[propr/grea] update meta.yml

nf-core · Dec 11, 2024 · ec50216 · ec50216
1 parent 72a7777
commit ec50216
Showing 1 changed file with 17 additions and 10 deletions.
diff --git a/modules/nf-core/propr/grea/meta.yml b/modules/nf-core/propr/grea/meta.yml
@@ -26,29 +26,34 @@ input:
           [id: 'test', ...]
     - adjacency:
         type: file
-        description: adjacency matrix for gene ratio proportionality/differential proportionality
+        description: adjacency matrix representing the graph connections (ie. 1 for edges, 0 otherwise).
+        This can be the adjacency matrix output from gene ratio approaches like propr/propd.
         pattern: "*.{csv,tsv}"
   - - meta2:
         type: map
         description: |
-          Groovy map containing study-wide metadata related to the knowledge database
+          Groovy Map containing data information.
+          This can be used at the workflow level to pass optional parameters to the module.
+          [id: 'test', ...]
     - gmt:
         type: file
-        description: relational database containing genes and GO terms (generated by
-          mygene module)
+        description: A tab delimited file format that describes gene sets. The first column is the
+        concept id (eg. GO term, pathway, etc), the second column is the concept description, and the
+        rest are nodes (eg. genes) that is associated to the given concept.
         pattern: "*.{gmt}"
 output:
-  - enrichedGO:
+  - results:
       - meta:
-          type: map
+          type: file
           description: |
             Groovy Map containing sample information.
             This can be used at the workflow level to pass optional parameters to the module.
             [id: 'test', ...]
-      - "*.go.tsv":
+      - "*.grea.tsv":
           type: file
-          description: File containing GO terms and their enrichment values
-          pattern: "*.{csv}"
+          description: Output file containing the information about the tested concepts (ie. gene sets)
+          and enrichment statistics.
+          pattern: "*.{tsv}"
   - versions:
       - versions.yml:
           type: file
@@ -57,9 +62,11 @@ output:
   - session_info:
       - "*.R_sessionInfo.log":
           type: file
-          description: R session log
+          description: dump of R SessionInfo
           pattern: "*.R_sessionInfo.log"
 authors:
   - "@caraiz2001"
+  - "@suzannejin"
 maintainers:
   - "@caraiz2001"
+  - "@suzannejin"