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add new module vt/decompose_blocksub #7139

Merged
merged 10 commits into from
Dec 4, 2024
Merged

add new module vt/decompose_blocksub #7139

merged 10 commits into from
Dec 4, 2024

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kubranarci
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PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@kubranarci kubranarci self-assigned this Dec 2, 2024
@kubranarci kubranarci linked an issue Dec 2, 2024 that may be closed by this pull request
new module: vt/decompose_blocksub #7138
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LouisLeNezet
LouisLeNezet requested changes Dec 2, 2024
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@LouisLeNezet LouisLeNezet left a comment

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Just a few tweaks but good to go for me 😉
Could I ask you to review the following in exchange ?
nf-core/test-datasets#1407

modules/nf-core/vt/decomposeblocksub/main.nf Outdated Show resolved Hide resolved
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LouisLeNezet
LouisLeNezet approved these changes Dec 4, 2024
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Just a few tweaks but good to go 😉

modules/nf-core/vt/decomposeblocksub/main.nf Outdated Show resolved Hide resolved
modules/nf-core/vt/decomposeblocksub/main.nf Outdated Show resolved Hide resolved
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kubranarci and others added 4 commits December 4, 2024 10:14
@kubranarci @LouisLeNezet
Update modules/nf-core/vt/decomposeblocksub/tests/main.nf.test
e613120 
Co-authored-by: Louis LE NEZET <58640615+LouisLeNezet@users.noreply.github.com>
@kubranarci @LouisLeNezet
Update modules/nf-core/vt/decomposeblocksub/main.nf
40996e0 
Co-authored-by: Louis LE NEZET <58640615+LouisLeNezet@users.noreply.github.com>
@kubranarci @LouisLeNezet
Update modules/nf-core/vt/decomposeblocksub/main.nf
0fa76cd 
Co-authored-by: Louis LE NEZET <58640615+LouisLeNezet@users.noreply.github.com>
@kubranarci
Merge branch 'master' into add_new_module_vt_decompose_blocksub
14aaf9e
@kubranarci kubranarci added this pull request to the merge queue Dec 4, 2024
Merged via the queue into nf-core:master with commit 30e4a82 Dec 4, 2024
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@kubranarci kubranarci deleted the add_new_module_vt_decompose_blocksub branch December 4, 2024 09:34
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@LouisLeNezet LouisLeNezet LouisLeNezet approved these changes

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new module: vt/decompose_blocksub
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@kubranarci @LouisLeNezet