Merge pull request #162 from JoseEspinosa/fixes

Fix channel creation for pdb_mmcfiles
nf-core · Jun 17, 2024 · 1e8fc3a · 1e8fc3a
2 parents c3c748a + ebe7b0a
commit 1e8fc3a
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/subworkflows/local/prepare_alphafold2_dbs.nf b/subworkflows/local/prepare_alphafold2_dbs.nf
@@ -65,9 +65,9 @@ workflow PREPARE_ALPHAFOLD2_DBS {
         ch_params         = Channel.value(file(alphafold2_params_path))
         ch_mgnify         = Channel.value(file(mgnify_path))
         ch_pdb70          = Channel.value(file(pdb70_path, type: 'dir' ))
-        ch_mmcif_files    = Channel.value(file(pdb_mmcif_path, type: 'dir'))
-        ch_mmcif_obsolete = Channel.value(file(pdb_mmcif_path, type: 'file'))
-        ch_mmcif          = ch_mmcif_files.mix(ch_mmcif_obsolete)
+        ch_mmcif_files    = file(pdb_mmcif_path, type: 'dir')
+        ch_mmcif_obsolete = file(pdb_mmcif_path, type: 'file')
+        ch_mmcif          = Channel.value(ch_mmcif_files + ch_mmcif_obsolete)
         ch_uniref30       = Channel.value(file(uniref30_alphafold2_path, type: 'any'))
         ch_uniref90       = Channel.value(file(uniref90_path))
         ch_pdb_seqres     = Channel.value(file(pdb_seqres_path))