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Update README.md
idoerg Sep 15, 2017
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Merge branch 'master' of https://github.com/nguyenngochuy91/Ancestral…
idoerg Mar 12, 2018
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11 changes: 6 additions & 5 deletions README.md
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Expand Up @@ -10,13 +10,14 @@ ancestral states.

## Requirements
* Python 2.7.6+
* Biopython 1.63+ (python-biopython)
* Muscle Alignment
* [Biopython >=1.63](Biopython)
* [http://www.drive5.com/muscle/downloads.htm](MUSCLE)
* ncbi-tools (ncbi-tools-bin)
* BLAST2 (blast2)
* BLAST+ (ncbi-blast+)
* ete3 (python framework for trees)

* [http://etetoolkit.org/](ete3)
install python-biopython muscle nscbi-tools-bin blast2 ete3
```
## Installation
User can either use github interface Download or type the following command in command line:
```bash
Expand All @@ -27,7 +28,7 @@ For the requirements, everything but ete3 can be installed using the following c
sudo apt-get install python-biopython ncbi-tools-bin blast2 ncbi-blast+ muscle
```

For ete3, user can check installation instructions on this website: http://etetoolkit.org/download/
For ete3, check installation instructions on this website: http://etetoolkit.org/download/

## Usage

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