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CHANGESLOG.md

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The Change Log

This is a bit overdue, but better Nate than lever, right? ----

0.4.75

  • add support for skesa as a subassembler!

0.4.71

  • add ribo try instead of runme.py

0.4.65

  • add --additional_libs option for final assembly

0.4.61

  • add --stages option for ribo run

0.4.54

  • added several commandline options for ribo spec
  • improved path filtering for ribo spec

0.4.52

  • added checking for args when using ribo run
  • fix dtt issues

0.3.0

Features

  • added filters to halt subassembly of contigs with poor coverage
  • added CLI option for min_cov_depth, where pseudocontigs failing to reach a minimum of 5x coverage (by default) will e rejected from future iterations

Fixes

  • improved printing diagnostics

0.2.0

Features

  • changes to default parameters

Fixes

  • improved pipeline congruency
  • fixed bug causing skipped iterations

0.1.0

This is the first logged change. We changed the commandline arguments so that it now supports a single-end library as input, not just paired end data.

Features

  • supports single-end library

Fixes

  • fixed library parsing realting to setting libtype