Sheesh, too impatient for the quickstart?
No time, on to the examples! Schnell!
The pseudogenome was constructed from the 7 rDNAs separated by several kb of flanking DNA. If can be found under ./riboSeed/integration_test/concatenated_seq.fasta in the git repo. If you have installed using setuptools, the integration_test folder will be installed in the site-packages dir, such as /venv-riboSeed/lib/python3.5/site-packages/riboSeed/integration_data/.
Two read files can be found in the same directory.
Run the analysis using the built in ribo try command.
ribo test
# This is running the following command under the hood,
# ribo run -r ./riboSeed/integration_data/concatenated_seq.fasta -F ./riboSeed/integration_data/test_reads1.fq -R ./riboSeed/integration_data/test_reads2.fq -o ./test1/ -v 1