1.4.0rc5

First release in the 1.4.x series.
This release includes enhancements and bug-fixes towards the release of the first
beta version of *dMRIPrep*.
It also contains new features that are necessary for the API overhaul that has
happened within the new *SDCFlows 2.x* series.
The new series include a cross-cutting (modalities, species) workflow to generate
EPI references.
Finally other *NiPreps* will also have a first release with specific support for
them: *NiRodents* and *NiBabies* (and their corresponding *fMRIPrep* extensions).

* FIX: Update svgutils after breaking API changes (#620)
* FIX: Address issues with ``RobustAverage`` global signal measurement (#607)
* FIX: Check for ``in_segm`` input, not ``seg_file`` (typo) (#592)
* FIX: Use the mask to calculate FOV rather than the fixed image in ``GenerateSamplingReference`` (#583)
* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Add an inversion operation to ``IntensityClip`` (#616)
* ENH: Cross-cutting (modalities, species) workflow to generate EPI references (#610)
* ENH: Add a ``RobustAverage`` interface and split volume selection (#602)
* ENH: Revise some patterns of the ``BIDSLayout`` config to aid *SDCFlows* new API (#585)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: Drop gh-pages history, reducing repository size (#622)
* MAINT: Add DS030 dataset, with clipped (55 timepoints) BOLD data (#609)
* MAINT: Migrate ``ds003_downsampled`` to ``nipreps-data`` (#608)
* MAINT: Move mask-regressions test-data to datalad + nipreps-data (#606)
* MAINT: Refactor structure of interfaces (#603)
* MAINT: Drop Python 3.6, test setuptools builds, pip installations, and revise Docker pinned versions (#593)
* MAINT: CircleCI housekeeping (#580)

1.4.0rc4

First release in the 1.4.x series.
This release includes enhancements and bug-fixes towards the release of the first
beta version of *dMRIPrep*.
It also contains new features that are necessary for the API overhaul that has
happened within the new *SDCFlows 2.x* series.
The new series include a cross-cutting (modalities, species) workflow to generate
EPI references.
Finally other *NiPreps* will also have a first release with specific support for
them: *NiRodents* and *NiBabies* (and their corresponding *fMRIPrep* extensions).

A list of prominent changes follows:

* FIX: Address issues with ``RobustAverage`` global signal measurement (#607)
* FIX: ``NonsteadyStatesDetector`` wrongly using Nipype's ``is_outlier`` (#605)
* FIX: Change in *svgutils*' API on 0.3.2 breaks reportlets (#599)
* FIX: Check for ``in_segm`` input, not ``seg_file`` (typo) (#592)
* FIX: Use the mask to calculate FOV rather than the fixed image in ``GenerateSamplingReference`` (#583)
* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Add an inversion operation to ``IntensityClip`` (#616)
* ENH: Cross-cutting (modalities, species) workflow to generate EPI references (#610)
* ENH: Add a ``RobustAverage`` interface and split volume selection (#602)
* ENH: Revise some patterns of the ``BIDSLayout`` config to aid *SDCFlows* new API (#585)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: Add DS030 dataset, with clipped (55 timepoints) BOLD data (#609)
* MAINT: Migrate ``ds003_downsampled`` to ``nipreps-data`` (#608)
* MAINT: Move mask-regressions test-data to datalad + nipreps-data (#606)
* MAINT: Refactor structure of interfaces (#603)
* MAINT: Drop Python 3.6, test setuptools builds, pip installations, and revise Docker pinned versions (#593)
* MAINT: CircleCI housekeeping (#580)

1.4.0rc3

* FIX: Check for ``in_segm`` input, not ``seg_file`` (typo) (#592)
* FIX: Use the mask to calculate FOV rather than the fixed image in ``GenerateSamplingReference`` (#583)
* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Revise some patterns of the ``BIDSLayout`` config to aid *SDCFlows*' new API (#585)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: Drop Python 3.6, test ``setuptools`` builds, ``pip`` installations, and revise Docker pinned versions (#593)
* MAINT: CircleCI housekeeping (#580)

1.4.0rc2

First release in the 1.4.x series.
This release includes enhancements and bug-fixes towards the release of the first
beta version of *dMRIPrep*.
It also contains new features that are necessary for the API overhaul that has
happened within the new *SDCFlows 2.x* series.
Finally other *NiPreps* will also have a first release with specific support for
them: *NiRodents* and *NiBabies* (and their corresponding *fMRIPrep* extensions).

A list of prominent changes follows:

* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: CircleCI housekeeping (#580)

1.4.0rc1

First release in the 1.4.x series.
This release includes enhancements and bug-fixes towards the release of the first
beta version of *dMRIPrep*.
It also contains new features that are necessary for the API overhaul that has
happened within the new *SDCFlows 2.x* series.
Finally other *NiPreps* will also have a first release with specific support for
them: *NiRodents* and *NiBabies* (and their corresponding *fMRIPrep* extensions).

A list of prominent changes follows:

* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: CircleCI housekeeping (#580)

1.4.0rc0

First release in the 1.4.x series.
This release includes enhancements and bug-fixes towards the release of the first
beta version of *dMRIPrep*.
It also contains new features that are necessary for the API overhaul that has
happened within the new *SDCFlows 2.x* series.
Finally other *NiPreps* will also have a first release with specific support for
them: *NiRodents* and *NiBabies* (and their corresponding *fMRIPrep* extensions).

A list of prominent changes follows:

* FIX: Allow omission of ``<res>`` for template normalization (#582)
* FIX: Include ``_T2starw`` ``_MTw`` and ``_TSE``-suffixes in ``build_path`` options (#584)
* FIX: ``DerivativesDataSink`` warning when it has multiple source files (#573)
* ENH: Upstream *fMRIPrep*'s ``init_bbreg_wf`` to integrate it in *dMRIPrep* (#586)
* MAINT: CircleCI housekeeping (#580)

1.3.2

Release Notes

Bug-fix release in the 1.3.x series.

CHANGES

• FIX: Cordon off .dtseries.json contents (#578)
• ENH: Add units to qform overwrite report (#577)

1.3.1

Release Notes

Bug-fix release in the 1.3.x series.
Addresses longstanding issues in the anatomical MRI brain extraction workflow.

CHANGES

• FIX: Revision of antsBrainExtraction, better handling edge cases (#567)

1.3.0

Release Notes

First release in the 1.3.x series. This release includes enhancements and bug-fixes towards the release of the first LTS (long-term support) version of fMRIPrep. PyBIDS has been revised to use more recent versions, a series of ANTs' interfaces have been deemed ready to upstream into Nipype, and several improvements regarding multi-echo EPI are included. With thanks to Basile Pinsard for contributions.

CHANGES

• FIX: Patch ApplyTransforms spec to permit identity in a chain (#554)
• FIX: Add dots to extensions in PyBIDS' config file (#548)
• FIX: Segmentation plots aligned with cardinal axes (#544)
• FIX: Skip T1w file existence check if anat_derivatives are provided (#545)
• FIX: Avoid diverting CIFTI dtype from original BOLD (#532)
• ENH: Add smooth input to RegridToZooms (#549)
• ENH: Enable DerivativesDataSink to take multiple source files to derive entities (#547)
• ENH: Allow bold_reference_wf to accept multiple EPIs/SBRefs (#408)
• ENH: Numerical stability of EPI brain-masks using probabilistic prior (#485)
• ENH: Add a pure-Python interface to resample to specific resolutions (#511)
• MAINT: Upstream all bug-fixes in the 1.2.9 release
• MAINT: Finalize upstreaming of ANTs' interfaces to Nipype (#550)
• MAINT: Update to Python +3.6 (#541)

1.2.9

Release Notes

Bug-fix release in the 1.2.x series with very minor problems addressed.

CHANGES

• FIX: Reportlets would crash in edge condition (#566)
• FIX: AROMA metadata CsfFraction -> CSFFraction (#563)
• FIX: Add DWI nonstandard spaces (#565)