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billdenney committed Mar 9, 2024
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Expand Up @@ -33,16 +33,6 @@ Using `nlmixr2targets` requires the use of the `targets` package. To learn
about the `targets` package, see
(https://docs.ropensci.org/targets/)[the targets website].

# Model modifications to use `nlmixr2targets`

When running a model with `nlmixr2targets`, it must be interpretable by the
`targets` package. The only notable issue comes from setting initial conditions
for a compartment, such as using `pd(0) <- initialConc`. The reason this
doesn't work is the `targets` package does not allow the assignment into zero.
So, for any initial conditions, you will need to set them with `initial` instead
of `0`. The example above would be `pd(initial) <- initialConc`, and
`nlmixr2targets` will convert it to the model `nlmixr2` expects for you.

# Running one model with one dataset (`tar_nlmixr()`)

The `tar_nlmixr()` function allows you to estimate one model with one dataset.
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