Update workflows to match working main branch R CMD check

nlmixr2 · Nov 7, 2022 · d8b6199 · d8b6199
1 parent a62d5fa
commit d8b6199
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Showing 3 changed files with 14 additions and 5 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -20,13 +20,14 @@ jobs:
         config:
           - {os: macos-latest,   r: 'release'}
           - {os: windows-latest, r: 'release'}
-          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
-          - {os: ubuntu-latest,   r: 'release'}
-
+          - {os: ubuntu-latest,  r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,  r: 'release'}
 
     env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      RSPM: ${{ matrix.config.rspm }}
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      R_KEEP_PKG_SOURCE: yes
+      _R_CHECK_FORCE_SUGGESTS_: false
 
     steps:
       - name: Install deps on MacOS

diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
@@ -20,14 +20,20 @@ jobs:
     concurrency:
       group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
     env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      RSPM: ${{ matrix.config.rspm }}
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      _R_CHECK_FORCE_SUGGESTS_: false
+
     steps:
       - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 
       - uses: r-lib/actions/setup-r@v2
         with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -12,7 +12,10 @@ jobs:
   test-coverage:
     runs-on: ubuntu-latest
     env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
+      RSPM: ${{ matrix.config.rspm }}
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      _R_CHECK_FORCE_SUGGESTS_: false
 
     steps:
       - uses: actions/checkout@v3
@@ -30,7 +33,6 @@ jobs:
             nlmixr2/rxode2parse
             nlmixr2/rxode2random
             nlmixr2/rxode2et
-            nlmixr2/rxode2
           needs: coverage
 
       - name: Test coverage