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Add modifying models article #620

Merged
merged 26 commits into from
Dec 8, 2023
Merged

Add modifying models article #620

merged 26 commits into from
Dec 8, 2023

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mattfidler
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@mattfidler mattfidler commented Dec 2, 2023 •
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Closes #563
Closes #632

@mattfidler mattfidler linked an issue Dec 2, 2023 that may be closed by this pull request
Write info about model piping #563
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@mattfidler
Merge remote-tracking branch 'origin/main' into 563-write-info-about-…
0ca7897 
…model-piping
@mattfidler
Merge branch 'main' into 563-write-info-about-model-piping
6a5a386
@mattfidler
add more information on piping
89962fa
@mattfidler
Merge branch 'main' into 563-write-info-about-model-piping
909fee8
@mattfidler
Add more information about parameter promotion
880b62b
@mattfidler
example re-arranging parameters
e7971e5
@mattfidler
Merge branch '625-inconsistent-append-behavior-between-ini-and-model-…
303a192 
…in-model-piping' into 563-write-info-about-model-piping
@mattfidler
Align piping in vignette
d1ffdd9
@mattfidler
Merge branch '625-inconsistent-append-behavior-between-ini-and-model-…
d52eea0 
…in-model-piping' into 563-write-info-about-model-piping
@mattfidler
Merge remote-tracking branch 'origin/629-mem-issues' into 563-write-i…
eb58c25 
…nfo-about-model-piping
@mattfidler
fix model()<- example
700f550
@mattfidler
Merge branch 'main' into 563-write-info-about-model-piping
b4a3796
@mattfidler
Re-export toTrialDuration
e06cb89
@mattfidler
Add ini data frame modification example
14e5a05
@mattfidler
Fix camelCase instead of snake_case
af801af
@mattfidler
prefer params over omega/sigma
9bcbfd3
@mattfidler
Change rxRename to rename everything in one pass
5613db5
@mattfidler
Fix errors in vignette
8e2aede
@mattfidler
add to pkgdown index
74b64dd
@mattfidler
be more careful with 1x1 sigma/omega matrices
11388cd
@mattfidler
Some fixes for plot
9b92ad7
@mattfidler
Comment out plotLog for now
889c3ba
@mattfidler
Add back
8665e32
@mattfidler
Add rename for thetaMat and sigma if present
386cd10
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Needs:

  • Test for rename with thetaMat and sigma in and out of meta or ui environment (reduce rxRename need for nonmem2rx)
  • Test simulate w/pars and without for ui sigma simulations without an endpoint.

@mattfidler mattfidler merged commit 2877ae6 into main Dec 8, 2023
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@mattfidler mattfidler deleted the 563-write-info-about-model-piping branch December 8, 2023 16:57
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