Merge pull request #72 from nlmixr2/71-feature-request-r-based-user-d…

…efined-functions

71 feature request r based user defined functions

DESCRIPTION

@@ -36,6 +36,7 @@ Imports:
     utils,
     digest,
     rex,
+    symengine,
     data.table (>= 1.12.4)
 Suggests:
     testthat (>= 3.0.0),

NAMESPACE

@@ -3,16 +3,29 @@
 S3method(as.data.frame,rxEtTran)
 S3method(print,rxModelVars)
 export(.convertId)
+export(.extraC)
+export(.extraCnow)
 export(.getLastIdLvl)
 export(.getWh)
+export(.rxC)
+export(.rxSEeqUsr)
 export(.rxTransInfo)
 export(.rxode2parseFunPtrs)
+export(.symengineFs)
 export(.toClassicEvid)
+export(.udfCallFunArg)
+export(.udfEnvReset)
+export(.udfEnvSet)
+export(.udfEnvSetUdf)
+export(.udfExists)
+export(.udfMd5Info)
 export(etTransParse)
 export(forderForceBase)
 export(rxDerived)
+export(rxFunParse)
 export(rxParseSetSilentErr)
 export(rxParseSuppressMsg)
+export(rxRmFunParse)
 export(rxSetIni0)
 export(rxode2parse)
 export(rxode2parseAssignPackagesToLoad)

NEWS.md

@@ -1,5 +1,11 @@
 # rxode2parse (development version)
 
+* Added ability to query R user functions in a rxode2 model (will
+  force single threaded solve)
+
+* Moved core `rxFunParse` and `rxRmFunParse` here so that C and R user
+  function clashes can be handled
+
 * Model variables now tracks which compartments have a lag-time defined
 
 * For compartment with steady state doses (NONMEM equivalent SS=1,
@@ -18,7 +24,7 @@
 
 * Steady state bolus doses with `addl` are treated as non steady state
   events (like what is observed in `NONMEM`)
-  
+
 * Timsort was upgraded; drop radix support in rxode2 struct
 
 # rxode2parse 2.0.16

R/RcppExports.R

@@ -71,7 +71,7 @@ etTransEvidIsObs <- function(isObsSexp) {
 #' @param ssAtDoseTime Boolean that when `TRUE` back calculates the
 #'   steady concentration at the actual time of dose, otherwise when
 #'   `FALSE` the doses are shifted
-#' 
+#'
 #' @return Object for solving in rxode2
 #'
 #' @keywords internal