Reasoned and remove any disjoint #17
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Made changes to Makefile
because mac uses python2 by default sigh...
removed all disjoint and owl:nothing equiv
| owl:annotatedProperty rdfs:subClassOf ; | ||
| owl:annotatedTarget ?sup ; | ||
| oio:is_inferred ?inferred ] . | ||
| } | ||
| } | ||
| FILTER (STRSTARTS(STR(?sup), "http://purl.obolibrary.org/obo/UBERON_")) | ||
| # Can't get double filter to work! |
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@dosumis The "UBERON_0002616" filter technically can work, however, many classes are mapped to "UBERON_0002616" (wrongly so for now) - adding this filter would remove a lot of classes that are in and need fixing rather than removal.
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I thought the idea was to remove very general classifications that come in through inference, rather than assertion as with this.
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there is, strangely enough, 8266 terms (around half of all terms) that are subclass of http://purl.obolibrary.org/obo/UBERON_0002616, all of which are inferred. I've uploaded the terms here: https://github.com/obophenotype/ABA_Uberon/blob/b1a0daed3376f10719c6d8dc2d246772bb5bf157/src/ontology/report/uberon0002616.tsv
report on uberon0002616 terms
# Conflicts: # src/ontology/Makefile # src/robot_templates/linkouts.tsv
This branch is with reason and I removed disjoint and owl:Nothing equiv classes
I've also regenerated the report comparing the original (in master) report vs one generated by this