Preparation for release v2024-07-10 (#2430)

obophenotype · Jul 10, 2024 · 901ba3b · 901ba3b
1 parent aaaa83d
commit 901ba3b
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Showing 37 changed files with 125,254 additions and 119,633 deletions.
diff --git a/cl-base.owl b/cl-base.owl
diff --git a/cl.obo b/cl.obo
diff --git a/patterns/definitions.owl b/patterns/definitions.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/cl/patterns/definitions.owl>
-<http://purl.obolibrary.org/obo/cl/releases/2024-02-13/patterns/definitions.owl>
-Annotation(owl:versionInfo "2024-02-13")
+<http://purl.obolibrary.org/obo/cl/releases/2024-07-09/patterns/definitions.owl>
+Annotation(owl:versionInfo "2024-07-09")
 
 
 

diff --git a/src/ontology/reports/cl-base-diff.md b/src/ontology/reports/cl-base-diff.md
diff --git a/src/ontology/reports/cl-edit.owl-obo-report.tsv b/src/ontology/reports/cl-edit.owl-obo-report.tsv
@@ -1,4 +1,6 @@
 Level Rule Name Subject Property Value
+WARN duplicate_scoped_synonym CL:4023064 oboInOwl:hasExactSynonym CGE interneuron
+WARN duplicate_scoped_synonym CL:4023064 oboInOwl:hasRelatedSynonym CGE interneuron
 WARN missing_definition CL:0000028 IAO:0000115 
 WARN missing_definition CL:0000030 IAO:0000115 
 WARN missing_definition CL:0000036 IAO:0000115 
@@ -26,7 +28,6 @@ WARN missing_definition CL:0000208 IAO:0000115
 WARN missing_definition CL:0000217 IAO:0000115 
 WARN missing_definition CL:0000237 IAO:0000115 
 WARN missing_definition CL:0000238 IAO:0000115 
-WARN missing_definition CL:0000239 IAO:0000115 
 WARN missing_definition CL:0000240 IAO:0000115 
 WARN missing_definition CL:0000241 IAO:0000115 
 WARN missing_definition CL:0000246 IAO:0000115 
@@ -86,7 +87,6 @@ WARN missing_definition CL:0000618 IAO:0000115
 WARN missing_definition CL:0000619 IAO:0000115 
 WARN missing_definition CL:0000661 IAO:0000115 
 WARN missing_definition CL:0000662 IAO:0000115 
-WARN missing_definition CL:0000666 IAO:0000115 
 WARN missing_definition CL:0000676 IAO:0000115 
 WARN missing_definition CL:0000678 IAO:0000115 
 WARN missing_definition CL:0000684 IAO:0000115 
@@ -112,8 +112,6 @@ WARN missing_definition CL:0001658 IAO:0000115
 WARN missing_definition CL:0007019 IAO:0000115 
 WARN missing_definition CL:0010013 IAO:0000115 
 WARN missing_definition CL:0010014 IAO:0000115 
-WARN missing_definition CL:0011025 IAO:0000115 
-WARN missing_definition CL:0011028 IAO:0000115 
 WARN missing_definition CL:1000082 IAO:0000115 
 WARN missing_definition CL:1000083 IAO:0000115 
 WARN missing_definition CL:1000085 IAO:0000115 
@@ -150,7 +148,6 @@ WARN missing_definition oboInOwl:hasRelatedSynonym IAO:0000115
 WARN missing_definition oboInOwl:hasSynonymType IAO:0000115 
 WARN missing_definition oboInOwl:inSubset IAO:0000115 
 WARN missing_definition oboInOwl:shorthand IAO:0000115 
-WARN missing_obsolete_label CL:0000736 rdfs:label embryonic gland hemocyte
 WARN missing_subset_declaration obo:cl#cellxgene_subset rdfs:subPropertyOf 
 WARN missing_synonymtype_declaration OMO:0003000 rdfs:subPropertyOf 
 WARN missing_synonymtype_declaration OMO:0003004 rdfs:subPropertyOf 
@@ -164,6 +161,7 @@ INFO missing_superclass CL:0000048 rdfs:subClassOf
 INFO missing_superclass CL:0000064 rdfs:subClassOf 
 INFO missing_superclass CL:0000067 rdfs:subClassOf 
 INFO missing_superclass CL:0000080 rdfs:subClassOf 
+INFO missing_superclass CL:0000082 rdfs:subClassOf 
 INFO missing_superclass CL:0000103 rdfs:subClassOf 
 INFO missing_superclass CL:0000104 rdfs:subClassOf 
 INFO missing_superclass CL:0000108 rdfs:subClassOf 
@@ -251,12 +249,14 @@ INFO missing_superclass CL:0001082 rdfs:subClassOf
 INFO missing_superclass CL:0002062 rdfs:subClassOf 
 INFO missing_superclass CL:0002067 rdfs:subClassOf 
 INFO missing_superclass CL:0002075 rdfs:subClassOf 
+INFO missing_superclass CL:0002076 rdfs:subClassOf 
 INFO missing_superclass CL:0002077 rdfs:subClassOf 
 INFO missing_superclass CL:0002078 rdfs:subClassOf 
 INFO missing_superclass CL:0002089 rdfs:subClassOf 
 INFO missing_superclass CL:0002132 rdfs:subClassOf 
 INFO missing_superclass CL:0002148 rdfs:subClassOf 
 INFO missing_superclass CL:0002200 rdfs:subClassOf 
+INFO missing_superclass CL:0002202 rdfs:subClassOf 
 INFO missing_superclass CL:0002205 rdfs:subClassOf 
 INFO missing_superclass CL:0002206 rdfs:subClassOf 
 INFO missing_superclass CL:0002208 rdfs:subClassOf 
@@ -304,7 +304,11 @@ INFO missing_superclass CL:0002569 rdfs:subClassOf
 INFO missing_superclass CL:0002570 rdfs:subClassOf 
 INFO missing_superclass CL:0002608 rdfs:subClassOf 
 INFO missing_superclass CL:0002621 rdfs:subClassOf 
+INFO missing_superclass CL:0002631 rdfs:subClassOf 
+INFO missing_superclass CL:0002632 rdfs:subClassOf 
+INFO missing_superclass CL:0002633 rdfs:subClassOf 
 INFO missing_superclass CL:0002634 rdfs:subClassOf 
+INFO missing_superclass CL:0002652 rdfs:subClassOf 
 INFO missing_superclass CL:0002673 rdfs:subClassOf 
 INFO missing_superclass CL:0002681 rdfs:subClassOf 
 INFO missing_superclass CL:0003001 rdfs:subClassOf 
@@ -465,7 +469,6 @@ INFO missing_superclass CL:1000378 rdfs:subClassOf
 INFO missing_superclass CL:1000381 rdfs:subClassOf 
 INFO missing_superclass CL:1000382 rdfs:subClassOf 
 INFO missing_superclass CL:1000385 rdfs:subClassOf 
-INFO missing_superclass CL:1000398 rdfs:subClassOf 
 INFO missing_superclass CL:1000405 rdfs:subClassOf 
 INFO missing_superclass CL:1000415 rdfs:subClassOf 
 INFO missing_superclass CL:1000433 rdfs:subClassOf 
@@ -490,7 +493,13 @@ INFO missing_superclass CL:1000505 rdfs:subClassOf
 INFO missing_superclass CL:1000507 rdfs:subClassOf 
 INFO missing_superclass CL:1000546 rdfs:subClassOf 
 INFO missing_superclass CL:1000549 rdfs:subClassOf 
+INFO missing_superclass CL:1000612 rdfs:subClassOf 
 INFO missing_superclass CL:1000692 rdfs:subClassOf 
+INFO missing_superclass CL:1000746 rdfs:subClassOf 
+INFO missing_superclass CL:1001005 rdfs:subClassOf 
+INFO missing_superclass CL:1001009 rdfs:subClassOf 
+INFO missing_superclass CL:1001099 rdfs:subClassOf 
+INFO missing_superclass CL:1001124 rdfs:subClassOf 
 INFO missing_superclass CL:1001225 rdfs:subClassOf 
 INFO missing_superclass CL:1001428 rdfs:subClassOf 
 INFO missing_superclass CL:1001433 rdfs:subClassOf 
@@ -604,11 +613,8 @@ INFO missing_superclass CL:3000003 rdfs:subClassOf
 INFO missing_superclass CL:3000004 rdfs:subClassOf 
 INFO missing_superclass CL:4023008 rdfs:subClassOf 
 INFO missing_superclass CL:4023009 rdfs:subClassOf 
-INFO missing_superclass CL:4023011 rdfs:subClassOf 
 INFO missing_superclass CL:4023012 rdfs:subClassOf 
 INFO missing_superclass CL:4023013 rdfs:subClassOf 
-INFO missing_superclass CL:4023015 rdfs:subClassOf 
-INFO missing_superclass CL:4023016 rdfs:subClassOf 
 INFO missing_superclass CL:4023017 rdfs:subClassOf 
 INFO missing_superclass CL:4023018 rdfs:subClassOf 
 INFO missing_superclass CL:4023019 rdfs:subClassOf 
@@ -623,11 +629,9 @@ INFO missing_superclass CL:4023057 rdfs:subClassOf
 INFO missing_superclass CL:4023058 rdfs:subClassOf 
 INFO missing_superclass CL:4023062 rdfs:subClassOf 
 INFO missing_superclass CL:4023063 rdfs:subClassOf 
-INFO missing_superclass CL:4023064 rdfs:subClassOf 
 INFO missing_superclass CL:4023066 rdfs:subClassOf 
 INFO missing_superclass CL:4023068 rdfs:subClassOf 
 INFO missing_superclass CL:4023069 rdfs:subClassOf 
-INFO missing_superclass CL:4023070 rdfs:subClassOf 
 INFO missing_superclass CL:4023072 rdfs:subClassOf 
 INFO missing_superclass CL:4023074 rdfs:subClassOf 
 INFO missing_superclass CL:4023076 rdfs:subClassOf 
@@ -669,6 +673,7 @@ INFO missing_superclass CL:4030017 rdfs:subClassOf
 INFO missing_superclass CL:4030020 rdfs:subClassOf 
 INFO missing_superclass CL:4030021 rdfs:subClassOf 
 INFO missing_superclass CL:4030022 rdfs:subClassOf 
+INFO missing_superclass CL:4030023 rdfs:subClassOf 
 INFO missing_superclass CL:4030025 rdfs:subClassOf 
 INFO missing_superclass CL:4030027 rdfs:subClassOf 
 INFO missing_superclass CL:4030028 rdfs:subClassOf