Fixes #2670 logical and textual defs - peptic cell

[Caroline-99]

Fixes #2670

• Revised logical and textual defs
• Added references

[Caroline-99]

#gogoeditdiff

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-18/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-master.owl/cl-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl/cl-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/cl/releases/2024-10-18/cl-simple.owl
• Loaded from: file:/__w/cell-ontology/cell-ontology/src/ontology/cl-simple-pr.owl/cl-simple.owl

Ontology imports

Ontology annotations

peptic cell http://purl.obolibrary.org/obo/CL_0000155

Removed

• peptic cell definition "A cell that is usually basal in position, cuboidal with round nucleus, short microvilli, secretes pepsinogen."

  • database_cross_reference "GOC:tfm"

• peptic cell has exact synonym "gastric chief cell"

• peptic cell has exact synonym "zymogenic cell"

Added

• peptic cell has exact synonym "gastric chief cell"

  • database_cross_reference "Wikipedia:Chief_cell"

• peptic cell definition "An epithelial cell of the stomach that is part of the fundic gastric gland. This cell is characterized by a basally located nucleus, abundant rough endoplasmic reticulum, and large apical secretory granules. It produces and secretes pepsinogen, the inactive precursor of the digestive enzyme pepsin."

  • database_cross_reference "PMID:30571046"

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "PMID:21907708"

  • database_cross_reference "Wikipedia:Gastric_chief_cell"

• peptic cell has exact synonym "zymogenic cell"

  • database_cross_reference "Wikipedia:Chief_cell"

• peptic cell SubClassOf exocrine cell

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/master/src/ontology/cl-edit.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/cl.owl
• Version IRI: None
• Loaded from: file:/__w/cell-ontology/cell-ontology/branch/src/ontology/cl-edit.owl

Ontology imports

Ontology annotations

peptic cell http://purl.obolibrary.org/obo/CL_0000155

Removed

• peptic cell has_exact_synonym "gastric chief cell"

• peptic cell has_exact_synonym "zymogenic cell"

• peptic cell definition "A cell that is usually basal in position, cuboidal with round nucleus, short microvilli, secretes pepsinogen."

  • database_cross_reference "GOC:tfm"

• peptic cell SubClassOf glandular epithelial cell of stomach

Added

• peptic cell has_exact_synonym "gastric chief cell"

  • database_cross_reference "Wikipedia:Chief_cell"

• peptic cell definition "An epithelial cell of the stomach that is part of the fundic gastric gland. This cell is characterized by a basally located nucleus, abundant rough endoplasmic reticulum, and large apical secretory granules. It produces and secretes pepsinogen, the inactive precursor of the digestive enzyme pepsin."

  • database_cross_reference "PMID:30571046"

  • database_cross_reference "GOC:tfm"

  • database_cross_reference "PMID:21907708"

  • database_cross_reference "Wikipedia:Gastric_chief_cell"

• peptic cell has_exact_synonym "zymogenic cell"

  • database_cross_reference "Wikipedia:Chief_cell"

• peptic cell SubClassOf part of some fundic gastric gland