Reduce the chatter of the local QC pipeline

[matentzn]

@pnrobinson asked me to ensure that the QC pipeline:

1. Never updates any files in git (previously, some reports were refreshed)
2. Is as fast as possible

This PR makes that change. Note, that for some reason, some (looking harmless) QC errors are being noted by the pipeline, such as:

Redundant subclass assertion found: 
   - Focal impaired awareness behavior arrest seizure (HP:0032790) -> Dialeptic seizure (HP:0011146)

Redundant subclass assertion found: 
   - Abnormal renal glomerulus morphology (HP:0000095) -> Abnormal nephron morphology (HP:0012575)

But I guess you will fix these when you next curate. (This part of the QC is not run on GitHub, only in your local CI)