Added obsolete PR:000050567

pr_slim.obo

@@ -1,12 +1,12 @@
 format-version: 1.2
-data-version: pr/obophenotype/releases/2024-11-20/pr_slim.owl
+data-version: pr/obophenotype/releases/2024-11-23/pr_slim.owl
 synonymtypedef: Gene-based ""
 synonymtypedef: PRO-proteoform-ftid ""
 synonymtypedef: PRO-proteoform-std ""
 synonymtypedef: PRO-short-label ""
 synonymtypedef: PSI-MOD-label ""
 ontology: pr/obophenotype/pr_slim
-property_value: owl:versionInfo "2024-11-20" xsd:string
+property_value: owl:versionInfo "2024-11-23" xsd:string
 
 [Term]
 id: BFO:0000019
@@ -135586,6 +135586,15 @@ union_of: PR:P0DN77 ! medium-wave-sensitive opsin 2 (human)
 union_of: PR:P0DN78 ! medium-wave-sensitive opsin 3 (human)
 relationship: only_in_taxon NCBITaxon:9606 ! Homo sapiens
 
+[Term]
+id: PR:000050567
+name: obsolete protein-containing material entity
+namespace: protein
+def: "OBSOLETE. A material entity that minimally consists of a protein." [PRO:DAN]
+comment: Note: Made obsolete since the term definition was much broader than intended. Originally meant to include only single proteins (and derivatives thereof; PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566), it instead also included cells defined as having certain protein attachments.
+is_obsolete: true
+consider: PR:000064867
+
 [Term]
 id: PR:000050571
 name: spermatogenesis-associated protein 33

pr_slim.owl

@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/pr/obophenotype/pr_slim.owl>
-<http://purl.obolibrary.org/obo/pr/obophenotype/releases/2024-11-20/pr_slim.owl>
-Annotation(owl:versionInfo "2024-11-20")
+<http://purl.obolibrary.org/obo/pr/obophenotype/releases/2024-11-23/pr_slim.owl>
+Annotation(owl:versionInfo "2024-11-23")
 
 Declaration(Class(<http://birdgenenames.org/cgnc/GeneReport?id=10067>))
 Declaration(Class(<http://birdgenenames.org/cgnc/GeneReport?id=10092>))
@@ -9608,6 +9608,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/PR_000050467>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000050468>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000050469>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000050522>))
+Declaration(Class(<http://purl.obolibrary.org/obo/PR_000050567>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000050571>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000050577>))
 Declaration(Class(<http://purl.obolibrary.org/obo/PR_000059593>))
@@ -28204,6 +28205,7 @@ Declaration(AnnotationProperty(<http://purl.org/dc/terms/license>))
 Declaration(AnnotationProperty(<http://purl.org/dc/terms/title>))
 Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty>))
 Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#auto-generated-by>))
+Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#consider>))
 Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#date>))
 Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#default-namespace>))
 Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#hasAlternativeId>))
@@ -172306,6 +172308,16 @@ SubClassOf(<http://purl.obolibrary.org/obo/PR_000050522> <http://purl.obolibrary
 SubClassOf(<http://purl.obolibrary.org/obo/PR_000050522> <http://purl.obolibrary.org/obo/PR_000029067>)
 SubClassOf(<http://purl.obolibrary.org/obo/PR_000050522> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/RO_0002160> <http://purl.obolibrary.org/obo/NCBITaxon_9606>))
 
+# Class: <http://purl.obolibrary.org/obo/PR_000050567> (obsolete protein-containing material entity)
+
+AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PRO:DAN") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/PR_000050567> "OBSOLETE. A material entity that minimally consists of a protein.")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#consider> <http://purl.obolibrary.org/obo/PR_000050567> "PR:000064867")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasOBONamespace> <http://purl.obolibrary.org/obo/PR_000050567> "protein")
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/PR_000050567> "PR:000050567")
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/PR_000050567> "Note: Made obsolete since the term definition was much broader than intended. Originally meant to include only single proteins (and derivatives thereof; PR:000000001), protein-containing complexes (GO:0032991), and protein aggregates (PR:000050566), it instead also included cells defined as having certain protein attachments.")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/PR_000050567> "obsolete protein-containing material entity")
+AnnotationAssertion(owl:deprecated <http://purl.obolibrary.org/obo/PR_000050567> "true"^^xsd:boolean)
+
 # Class: <http://purl.obolibrary.org/obo/PR_000050571> (spermatogenesis-associated protein 33)
 
 AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PRO:DAN") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "PRO:KRC") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/PR_000050571> "A protein that is a translation product of the human SPATA33 gene or a 1:1 ortholog thereof.")

seed.txt

@@ -6007,6 +6007,7 @@ PR:000050353
 PR:000050369
 PR:000050388
 PR:000050469
+PR:000050567
 PR:000050571
 PR:000059674
 PR:000059676