Releases: obophenotype/uberon
Releases · obophenotype/uberon
v2024-09-03 Release
What's Changed
- Replace only_in_taxon by in_taxon. by @gouttegd in #3335
- Use ODK 1.5.2 for the CI test suite. by @gouttegd in #3338
- Updated text definition for issue #3294 by @sumirp in #3318
- add synonym skin of armpit by @paulacalipho in #3341
- add synonym "hindlimb zeugopod skin" to "lower leg skin" UBERON:0004264 by @paulacalipho in #3342
- Fix #3344 broken link to SSOM documentation by @aleixpuigb in #3345
- NTR humeral circumflex arteries by @aleixpuigb in #3343
- Fix the check for taxon constraint violations by @gouttegd in #3336
- Add ethmoidal veins by @rays22 in #3348
- Adresses #3215 NTRs ureter by @aleixpuigb in #3347
- Update imports 03092024 by @AvolaAmg in #3351
- Add sensory corpuscle by @lubianat in #3295
- 2024-09-03 Release by @anitacaron in #3352
New Contributors
Full Changelog: v2024-08-07...v2024-09-04
Contributors
anitacaron, paulacalipho, and 6 other contributors
Assets 128
- 27.6 MB
2024-09-04T15:48:58Z - 11.6 MB
2024-09-04T15:48:58Z - 41.5 MB
2024-09-04T15:49:00Z - 1.09 MB
2024-09-04T15:49:02Z - 1.79 MB
2024-09-04T15:48:26Z - 810 KB
2024-09-04T15:48:26Z - 3.27 MB
2024-09-04T15:48:27Z - 87.6 KB
2024-09-04T15:48:27Z - 2.64 MB
2024-09-04T15:48:27Z - 1.17 MB
2024-09-04T15:48:28Z -
2024-09-04T15:45:40Z -
2024-09-04T15:45:40Z - Loading
v2024-08-07 Release
Synonyms added: 31
| Term | New Synonym | Predicate |
|---|---|---|
| primary lateral incisor tooth (UBERON:0018554) | primary second incisor tooth | oio:hasExactSynonym |
| subserosa of fallopian tube (UBERON:8480037) | subserosa of uterine tube | oio:hasExactSynonym |
| lower lateral incisor tooth (UBERON:0018602) | lower second incisor tooth | oio:hasExactSynonym |
| upper central primary incisor tooth (UBERON:0018593) | primary upper first incisor tooth | oio:hasExactSynonym |
| right fallopian tube (UBERON:0001302) | right oviduct | oio:hasBroadSynonym |
| upper lateral primary incisor tooth (UBERON:0018594) | primary upper second incisor tooth | oio:hasExactSynonym |
| submucosa of fallopian tube (UBERON:0011298) | submucosa of uterine tube | oio:hasExactSynonym |
| lower central incisor tooth (UBERON:0018601) | lower first incisor tooth | oio:hasExactSynonym |
| mucosa of left fallopian tube (UBERON:0005012) | mucosa of left uterine tube | oio:hasExactSynonym |
| fimbria of fallopian tube (UBERON:8410010) | fimbria of uterine tube | oio:hasExactSynonym |
| mucosa of right fallopian tube (UBERON:0005011) | mucosa of right uterine tube | oio:hasExactSynonym |
| incisor tooth 2 (UBERON:0018552) | second incisor tooth | oio:hasExactSynonym |
| lumen of pulmonary alveolus (UBERON:8850000) | lumen of alveolus | oio:hasBroadSynonym |
| upper central incisor tooth (UBERON:0018603) | upper first incisor tooth | oio:hasExactSynonym |
| left fallopian tube (UBERON:0001303) | left uterine tube | oio:hasExactSynonym |
| right fallopian tube (UBERON:0001302) | right uterine tube | oio:hasExactSynonym |
| upper central secondary incisor tooth (UBERON:0016454) | secondary upper first incisor tooth | oio:hasExactSynonym |
| upper lateral incisor tooth (UBERON:0018604) | upper second incisor tooth | oio:hasExactSynonym |
| ampulla of fallopian tube (UBERON:0012648) | ampulla of uterine tube | oio:hasExactSynonym |
| mucosa of fallopian tube (UBERON:0005048) | mucosa of uterine tube | oio:hasExactSynonym |
| primary central incisor tooth (UBERON:0018553) | primary first incisor tooth | oio:hasExactSynonym |
| serosa of fallopian tube (UBERON:0012499) | serosa of uterine tube | oio:hasExactSynonym |
| lumen of pulmonary alveolus (UBERON:8850000) | pulmonary alveolar cavity | oio:hasExactSynonym |
| wall of fallopian tube (UBERON:0036441) | wall of uterine tube | oio:hasExactSynonym |
| lower central secondary incisor tooth (UBERON:0018568) | secondary lower first incisor tooth | oio:hasExactSynonym |
| left fallopian tube (UBERON:0001303) | left oviduct | oio:hasBroadSynonym |
| incisor tooth 1 (UBERON:0018551) | first incisor tooth | oio:hasExactSynonym |
| lumen of pulmonary alveolus (UBERON:8850000) | cavity of pulmonary alveolus | oio:hasExactSynonym |
| upper lateral secondary incisor tooth (UBERON:0016455) | secondary upper second incisor tooth | oio:hasExactSynonym |
| lumen of pulmonary alveolus (UBERON:8850000) | alveolar lumen | oio:hasBroadSynonym |
| lower lateral secondary incisor tooth (UBERON:0018570) | secondary lower second incisor tooth | oio:hasExactSynonym |
Relationships added: 29
| Subject | Predicate | Object |
|---|---|---|
| proximal straight tubule (UBERON:0001290) | RO:0002131 | renal cortex tubule (UBERON:0006853) |
| isthmus of fallopian tube (UBERON:0016632) | subClassOf (rdfs:subClassOf) | subdivision of oviduct (UBERON:0013515) |
| lower central incisor tooth (UBERON:0018601) | BSPO:0020001 | incisor region of dentition (UBERON:0018645) |
| intestinal villus (UBERON:0001213) | BFO:0000051 | CL:0000066 |
| isthmus of fallopian tube (UBERON:0016632) | subClassOf (rdfs:subClassOf) | mesoderm-derived structure (UBERON:0004120) |
| epithelium of vagina (UBERON:0001344) | subClassOf (rdfs:subClassOf) | meso-epithelium (UBERON:0012275) |
| oviduct epithelium (UBERON:0004804) | BFO:0000050 | oviduct (UBERON:0000993) |
| lip (UBERON:0001833) | BFO:0000050 | face (UBERON:0001456) |
| upper part of vagina (UBERON:0003974) | subClassOf (rdfs:subClassOf) | subdivision of oviduct (UBERON:0013515) |
| fimbria of fallopian tube (UBERON:8410010) | subClassOf (rdfs:subClassOf) | mesoderm-derived structure (UBERON:0004120) |
| parallel fiber, teleost (UBERON:2002218) | RO:0002160 | NCBITaxon:32443 |
| upper part of vagina (UBERON:0003974) | RO:0002202 | Mullerian duct (UBERON:0003890) |
| placental caruncle (UBERON:0017259) | RO:0001025 | uterus (UBERON:0000995) |
| upper central incisor tooth (UBERON:0018603) | BSPO:0020001 | incisor region of dentition (UBERON:0018645) |
| endothelial blood brain barrier (UBERON:0000201) | RO:0002473 | CL:0000115 |
| lower lateral incisor tooth (UBERON:0018602) | BSPO:0000126 | incisor region of dentition (UBERON:0018645) |
| lumen of pulmonary alveolus (UBERON:8850000) | RO:0002572 | alveolus of lung (UBERON:0002299) |
| primary central incisor tooth (UBERON:0018553) | BSPO:0020001 | incisor region of dentition (UBERON:0018645) |
| lumen of pulmonary alveolus (UBERON:8850000) | subClassOf (rdfs:subClassOf) | anatomical cavity (UBERON:0002553) |
| upper part of vagina (UBERON:0003974) | subClassOf (rdfs:subClassOf) | mesoderm-derived structure (UBERON:0004120) |
| oviduct epithelium (UBERON:0004804) | subClassOf (rdfs:subClassOf) | epithelium (UBERON:0000483) |
| proximal straight tubule (UBERON:0001290) | RO:0002131 | outer medulla outer stripe loop of Henle (UBERON:0006542) |
| primary lateral incisor tooth (UBERON:0018554) | subClassOf (rdfs:subClassOf) | lateral structure (UBERON:0015212) |
| upper lateral incisor tooth (UBERON:0018604) | subClassOf (rdfs:subClassOf) | lateral structure (UBERON:0015212) |
| lower lateral incisor tooth (UBERON:0018602) | subClassOf (rdfs:subClassOf) | lateral structure (UBERON:0015212) |
| fimbria of fallopian tube (UBERON:8410010) | subClassOf (rdfs:subClassOf) | subdivision of oviduct (UBERON:0013515) |
| primary lateral incisor tooth (UBERON:0018554) | BSPO:0000126 | incisor region of dentition (UBERON:0018645) |
| upper lateral incisor tooth (UBERON:0018604) | BSPO:0000126 | incisor region of dentition (UBERON:0018645) |
| skin of lip (UBERON:0001458) | subClassOf (rdfs:subClassOf) | skin of face (UBERON:1000021) |
Relationships removed: 26
| Subject | Predicate | Object |
|---|---|---|
| incisor tooth 1 (UBERON:0018551) | BSPO:0020001 | incisor region of dentition (UBERON:0018645) |
| proximal straight tubule (UBERON:0001290) | BFO:0000050 | outer medulla outer stripe loop of Henle (UBERON:0006542) |
| isthmus of fallopian tube (UBERON:0016632) | subClassOf (rdfs:subClassOf) | fallopian tube (UBERON:0003889) |
| lower lateral incisor tooth (UBERON:0018602) | subClassOf (rdfs:subClassOf) | incisor tooth 2 (UBERON:0018552) |
| oviduct epithelium (UBERON:0004804) | subClassOf (rdfs:subClassOf) | meso-epithelium (UBERON:0012275) |
| fimbria of fallopian tube (UBERON:8410010) | subClassOf (rdfs:subClassOf) | fallopian tube (UBERON:0003889) |
| endothelial blood brain barrier (UBERON:0000201) | subClassOf (rdfs:subClassOf) | endothelium (UBERON:0001986) |
| skin of upper lip (UBERON:0018151) | subClassOf (rdfs:subClassOf) | skin of face (UBERON:1000021) |
| incisor tooth 2 (UBERON:0018552) | BSPO:0000126 | incisor region of dentition (UBERON:0018645) |
| upper part of vagina (UBERON:0003974) | subClassOf (rdfs:subClassOf) | fallopian tube (UBERON:0003889) |
| capillary bed (UBERON:0013141) | subClassOf (rdfs:subClassOf) | squamous epithelium (UBERON:0006914) |
| arachnoid barrier layer (UBERON:0000437) | subClassOf (rdfs:subClassOf) | mesoderm-derived structure (UBERON:0004120) |
| endometrium luminal epithelium (UBERON:0011949) | subClassOf (rdfs:subClassOf) | mesoderm-derived structure (UBERON:0004120) |
| endometrial gland (UBERON:0002451) | subClassOf (rdfs:subClassOf) | mesoderm-derived structure (UBERON:0004120) |
| endometrial gland (UBERON:0002451) | subClassOf (rdfs:subClassOf) | pelvic region element (UBERON:0005179) |
| skin of lip (UBERON:0001458) | subClassOf (rdfs:subClassOf) | zone of skin (UBERON:0000014) |
| upper lateral incisor tooth (UBERON:0018604) | subClassOf (rdfs:subClassOf) | incisor tooth 2 (UBERON:0018552) |
| upper central incisor tooth (UBERON:0018603) | subClassOf (rdfs:subClassOf) | incisor tooth 1 (UBERON:0018551) |
| primary central incisor tooth (UBERON:0018553) | subClassOf (rdfs:subClassOf) | incisor tooth 1 (UBERON:0018551) |
| primary lateral incisor tooth (UBERON:0018554) | subClassOf (rdfs:subClassOf) | incisor tooth 2 (UBERON:0018552) |
| oviduct epithelium (UBERON:0004804) | BFO:0000050 | fallopian tube (UBERON:0003889) |
| incisor tooth 2 (UBERON:0018552) | subClassOf (rdfs:subClassOf) | lateral structure (UBERON:0015212) |
| lower central incisor tooth (UBERON:0018601) | subClassOf (rdfs:subClassOf) | incisor tooth 1 (UBERON:0018551) |
| face (UBERON:0001456) | BFO:0000051 | mouth (UBERON:0000165) |
| parallel fiber, teleost (UBERON:2002218) | RO:0002160 | NCBITaxon:70862 |
| p... |
Contributors
anitacaron, meghalithic, and 2 other contributors
Assets 128
v2024-07-02 Release
Nodes added to subset: 73
| Term | Subset |
|---|---|
| chorionic villous mesenchyme (UBERON:8600039) | human_reference_atlas |
| femoral nerve (UBERON:0001267) | human_reference_atlas |
| communicating branch of spinal nerve (UBERON:0017642) | human_reference_atlas |
| ophthalmic plexus (UBERON:0011194) | human_reference_atlas |
| chorionic villous tree (UBERON:8600026) | human_reference_atlas |
| palmar branch of median nerve (UBERON:0016430) | human_reference_atlas |
| lingual nerve (UBERON:0003721) | human_reference_atlas |
| lateral tuberal nucleus (UBERON:0000435) | human_reference_atlas |
| palatine tonsil (UBERON:0002373) | human_reference_atlas |
| sacral nerve (UBERON:0009625) | human_reference_atlas |
| vidian nerve (UBERON:0018412) | human_reference_atlas |
| lumbar nerve (UBERON:0009624) | human_reference_atlas |
| nerve root (UBERON:0002211) | human_reference_atlas |
| long ciliary nerve (UBERON:0022301) | human_reference_atlas |
| geniculate ganglion (UBERON:0001700) | human_reference_atlas |
| short ciliary nerve (UBERON:0022302) | human_reference_atlas |
| autonomic nerve (UBERON:0034728) | human_reference_atlas |
| inferior hypogastric nerve plexus (UBERON:0002014) | human_reference_atlas |
| thoracic splanchnic nerve (UBERON:0018679) | human_reference_atlas |
| ventral ramus of spinal nerve (UBERON:0006838) | human_reference_atlas |
| postganglionic sympathetic fiber (UBERON:0011926) | human_reference_atlas |
| lesser splanchnic nerve (UBERON:0018681) | human_reference_atlas |
| spinal nerve plexus (UBERON:0001813) | human_reference_atlas |
| preganglionic autonomic fiber (UBERON:0011925) | human_reference_atlas |
| recurrent laryngeal nerve (UBERON:0003716) | human_reference_atlas |
| lacrimal nerve (UBERON:0011096) | human_reference_atlas |
| saphenous nerve (UBERON:0002475) | human_reference_atlas |
| tympanic nerve (UBERON:0036216) | human_reference_atlas |
| pelvic splanchnic nerve (UBERON:0018675) | human_reference_atlas |
| parasympathetic nerve (UBERON:0004293) | human_reference_atlas |
| greater splanchnic nerve (UBERON:0018680) | human_reference_atlas |
| mesenteric plexus (UBERON:0035771) | human_reference_atlas |
| inferior mesenteric nerve plexus (UBERON:0035770) | human_reference_atlas |
| superior mesenteric plexus (UBERON:0005488) | human_reference_atlas |
| chorionic terminal villous capillary (UBERON:8600041) | human_reference_atlas |
| splanchnic nerve (UBERON:0003715) | human_reference_atlas |
| meningeal branch of spinal nerve (UBERON:0017641) | human_reference_atlas |
| endometrial lymphatic vessel (UBERON:8600042) | human_reference_atlas |
| placental disc (UBERON:8600038) | human_reference_atlas |
| nasopalatine nerve (UBERON:0008810) | human_reference_atlas |
| hypogastric nerve (UBERON:0005303) | human_reference_atlas |
| chorionic mature intermediate villus (UBERON:8600031) | human_reference_atlas |
| postganglionic autonomic fiber (UBERON:0011924) | human_reference_atlas |
| short descending thin limb (UBERON:0005099) | human_reference_atlas |
| superior hypogastric nerve plexus (UBERON:0002013) | human_reference_atlas |
| thoracic nerve (UBERON:0003726) | human_reference_atlas |
| ventral root of spinal cord (UBERON:0002260) | human_reference_atlas |
| chorionic terminal villus (UBERON:8600030) | human_reference_atlas |
| nerve of cervical vertebra (UBERON:0000962) | human_reference_atlas |
| chorda tympani branch of facial nerve (UBERON:0009675) | human_reference_atlas |
| frontal nerve (branch of ophthalmic) (UBERON:0000942) | human_reference_atlas |
| postganglionic parasympathetic fiber (UBERON:0011929) | human_reference_atlas |
| spinal nerve root (UBERON:0009623) | human_reference_atlas |
| epibranchial ganglion (UBERON:0009127) | human_reference_atlas |
| chorionic mesenchymal villus (UBERON:8600028) | human_reference_atlas |
| kidney loop of Henle long descending thin limb inner medulla (UBERON:8600037) | human_reference_atlas |
| nasociliary nerve (UBERON:0022300) | human_reference_atlas |
| superior laryngeal nerve (UBERON:0011326) | human_reference_atlas |
| chorionic stem villous blood vessel (UBERON:8600040) | human_reference_atlas |
| least splanchnic nerve (UBERON:0001964) | human_reference_atlas |
| internal carotid nerve plexus (UBERON:0002024) | human_reference_atlas |
| chorionic stem villus (UBERON:8600027) | human_reference_atlas |
| aortic plexus (UBERON:0035772) | human_reference_atlas |
| superior vagus X ganglion (UBERON:0005364) | human_reference_atlas |
| kidney loop of Henle long descending thin limb outer medulla (UBERON:8600036) | human_reference_atlas |
| myenteric nerve plexus of small intestine (UBERON:8410063) | human_reference_atlas |
| lumbar splanchnic nerve (UBERON:0018683) | human_reference_atlas |
| chorionic immature intermediate villus (UBERON:8600029) | human_reference_atlas |
| dorsal ramus of spinal nerve (UBERON:0006839) | human_reference_atlas |
| pelvic ganglion (UBERON:0016508) | human_reference_atlas |
| carotid sinus nerve (UBERON:0009009) | human_reference_atlas |
| spinal nerve trunk (UBERON:0005476) | human_reference_atlas |
| submucous nerve plexus of colon (UBERON:8410059) | human_reference_atlas |
Mappings added: 47
| Subject | Predicate | Object |
|---|---|---|
| lateral femoral circumflex vein (UBERON:8600065) | oio:hasDbXref | FMA:70921 |
| thoracoacromial vein (UBERON:8600074) | oio:hasDbXref | FMA:23058 |
| ascending palatine artery (UBERON:8600095) | oio:hasDbXref | FMA:49555 |
| subsegmental pulmonary artery (UBERON:8600060) | oio:hasDbXref | FMA:9311 |
| lumbar vein (UBERON:8600105) | oio:hasDbXref | FMA:70889 |
| hypoglossal nerve root (UBERON:0004675) | oio:hasDbXref | HBA:9343 |
| accessory meningeal artery (UBERON:8600099) | oio:hasDbXref | FMA:79467 |
| superficial iliac circumflex vein (UBERON:8600082) | oio:hasDbXref | FMA:44319 |
| submental artery (UBERON:8600096) | oio:hasDbXref | FMA:49561 |
| accessory nerve root (UBERON:0014615) | oio:hasDbXref | HBA:9340 |
| transverse cervical vein (UBERON:8600075) | oio:hasDbXref | FMA:50858 |
| radial vein (UBERON:8600092) | oio:hasDbXref | FMA:22947 |
| sublingual vein (UBERON:8600071) | oio:hasDbXref | FMA:50836 |
| supreme intercostal vein (UBERON:8600054) | oio:hasDbXref | FMA:4744 |
| root of cranial nerve (UBERON:0006843) | oio:hasDbXref | HBA:9299 |
| dorsal lingual artery (UBERON:8600098) | oio:hasDbXref | FMA:49546 |
| middle hemorrhoidal vein (UBERON:8600057) | oio:hasDbXref | FMA:18893 |
| ulnar vein (UBERON:8600093) | oio:hasDbXref | FMA:22950 |
| artery of pterygoid canal (UBERON:8600100) | oio:hasDbXref | FMA:85528 |
| segmental pulmonary vein (UBERON:8600051) | oio:hasDbXref | FMA:9411 |
| fibular vein (UBERON:8600083) | oio:hasDbXref | FMA:71587 |
| deep lingual artery (UBERON:8600097) | oio:hasDbXref | FMA:49532 |
| anterior internal vertebral venous plexus (UBERON:8600103) | oio:hasDbXref | FMA:4869 |
| deep lingual vein (UBERON:8600069) | oio:hasDbXref | FMA:50830 |
| glossopharyngeal nerve root (UBERON:0019310) | oio:hasDbXref | HBA:9334 |
| dorsal lingual vein (UBERON:8600070) | oio:hasDbXref | FMA:50826 |
| lateral sacral vein (UBERON:8600056) | oio:hasDbXref | FMA:18905 |
| pulmonary arteriole (UBERON:8600077) | oio:hasDbXref | FMA:279896 |
| pericardial artery (UBERON:8600080) | oio:hasDbXref | FMA:69329 |
| ascending pharyngeal artery (UBERON:8600078) | oio:hasDbXref | FMA:49497 |
| intervertebral vein (UBERON:8600104) | oio:hasDbXref | FMA:76736 |
| deep cervical vein (UBERON:8600059) | oio:hasDbXref | FMA:4746 |
| descending palatine artery (UBERON:8600101) | oio:hasDbXref | FMA:49791 |
| supratrochlear vein (UBERON:8600088) | oio:hasDbXref | FMA:50898 |
| suboccipital venous plexus (UBERON:8600076) | oio:hasDbXref | FMA:50803 |
| inferior anastomotic vein (UBERON:8600091) | oio:hasDbXref | FMA:51239 |
| esophageal vein (UBERON:8600053) | oio:hasDbXref | FMA:4748 |
| trigeminal nerve root (UBERON:0004673) | oio:hasDbXref | HBA:9322 |
| left anterior descending artery (UBERON:8600102) | oio:hasDbXref | FMA:3862 |
| basivertebral vein (UBERON:8600066) | oio:hasDbXref | FMA:321542 |
| uterine vein (UBERON:8600058) | oio:hasDbXref | FMA:18896 |
| subsegmental pulmonary vein (UBERON:8600052) | oio:hasDbXref | FMA:9413 |
| thyrocervical trunk (UBERON:8600062) | oio:hasDbXref | FMA:3990 |
| root of vagus nerve (UBERON:0011213) | oio:hasDbXref | HBA:9337 |
| external nasal vein (UBERON:8600087) | oio:hasDbXref | FMA:50910 |
| percardiacophrenic artery (UBERON:8600081) | oio:hasDbXref | FMA:3964 |
| atrioventricular nodal artery (UBERON:8600055) | oio:hasDbXref | FMA:3851 |
Classes added: 55
| Term |
|---|
| subsegmental pulmonary artery (UBERON:8600060) |
| suboccipital venous plexus (UBERON:8600076) |
| thyrocervical trunk (UBERON:8600062) |
| glandular venous plexus (UBERON:8600072) |
| segmental pulmonary vein (UBERON:8600051) |
| percardiacophrenic artery (UBERON:8600081) |
| deep cervical vein (UBERON:8600059) |
| ulnar vein (UBERON:8600093) |
| incisor artery (UBERON:8600086) |
| circumflex humeral vein (UBERON:8600073) |
| left anterior descending artery (UBERON:8600102) |
| artery of pterygoid canal (UBERON:8600100) |
| deep lingual vein (UBERON:8600069) |
| basivertebral vein (UBERON:8600066) |
| atrioventricular nodal artery (UBERON:8600055) |
| ascending palatine artery (UBERON:8600095) |
| middle hemorrhoidal vein (UBERON:8600057) |
| dorsal lingual artery (UBERON:8600098) |
| pericardial artery (UBERON:8600080) |
| transverse cervical vein (UBERON:8600075) |
| sublingual vein (UBERON:8600071) |
| posterolateral artery (UBERON:8600064) |
| supreme intercostal vein (UBERON:8600054) |
| superficial iliac circumflex vein (UBERON:8600082) |
| pulmonary arteriole (UBERON:8600077) |
| ... |
Contributors
balhoff, anitacaron, and 4 other contributors
Assets 128
v2024-05-13 Release
What's Changed
- Use ODK-managed ROBOT plugins. by @gouttegd in #3248
- Publish SSSOM mappings by @gouttegd in #3249
- Fixes #3246 logical definition upper fourth secondary molar tooth by @aleixpuigb in #3251
- Miscellaneous documentation updates by @gouttegd in #3256
- [RFC] Add code of conduct by @gouttegd in #3192
- Create design pattern documentation by @aleixpuigb in #3116
- Fix ORCID individuals import by @anitacaron in #3257
- Fixes #3258 substitute obsoleted GO term 'reproduction' by @aleixpuigb in #3259
- Update uberon-idranges.owl by @JABelfiore in #3260
- Addresses #3252 NTR trophoblast island by @aleixpuigb in #3253
- Fixes #3055 class hierarchy 'arthropod neurohemal organ' by @JABelfiore in #3261
- Fix downloading of FBbt mapping set by @gouttegd in #3263
- Add new editors by @aleixpuigb in #3272
- Refresh external resources May 24 Release by @anitacaron in #3275
- 2024-05-13 Release by @anitacaron in #3276
New Contributors
- @JABelfiore made their first contribution in #3260
Full Changelog: v2024-03-22...v2024-05-13
Contributors
anitacaron, gouttegd, and 2 other contributors
Assets 128
v2024-03-22 Release
The full release diff is available here
What's Changed
- 3056 Fix duplicate mappings by @gouttegd in #3126
- Assert the exocrine pancreas to be part of the digestive system by @rays22 in #3227
- Remove custom OBO generation rule. by @gouttegd in #3230
- Remove intermediate file
external-disjoints.owlby @gouttegd in #3233 - Fixes #3224 typo definition tonsillar ring by @aleixpuigb in #3235
- Fixes #3200 revision of periderm by @aleixpuigb in #3231
- Fixes #3214 NTR urinary bladder regional terms by @aleixpuigb in #3236
- Remove mapping between UBERON:0014764 and HAO:0001525. by @gouttegd in #3240
- Add id range for Jim Balhoff. by @balhoff in #3241
- Update ODK 1.5 by @anitacaron in #3242
- Filter and reconcile the Biomappings set using sssom-cli by @gouttegd in #3152
- Refresh external resources for release by @anitacaron in #3244
- 2024-03-22 Release by @anitacaron in #3245
Full Changelog: v2024-02-20...v2024-03-22
Contributors
balhoff, anitacaron, and 3 other contributors
Assets 127
v2024-02-20 Release
You can check the ROBOT diff here
What's Changed
- Remove axioms for dubious merelogical sums. by @gouttegd in #3194
- Use official PURLs for the FMA bridge. by @gouttegd in #3127
- Fixes #3046 text definition kidney by @aleixpuigb in #3204
- Remove basic.owl and metazoan-view.owl by @gouttegd in #3201
- Fixes #3202 and #3203 spleen hierarchy by @aleixpuigb in #3205
- Fix classification of 'insect dorsal ectoderm derivative'. by @gouttegd in #3191
- Obsolete and merge a handful of redundant terms by @gouttegd in #3218
- Remove
considertags pointing to Wikipedia pages by @gouttegd in #3207 - Fixes #3221 import RO vessel relationships and refresh imports by @aleixpuigb in #3222
- add synonym adipose bod of the orbit and adipose tissue of ocular region by @paulacalipho in #3220
- Use a dedicated token for the ontobot workflow. by @gouttegd in #3225
- 2024-02-20 Release by @anitacaron in #3226
Full Changelog: v2024-01-18...v2024-02-20
Contributors
anitacaron, paulacalipho, and 2 other contributors
Assets 127
Release v2024-01-18
What's Changed
- add synonym 'esophagus distal third' to 'lower esophagus' UBERON:0013473 by @paulacalipho in #3148
- add synonyms 'lateral border of tongue' and 'lateral surface of the tongue' to 'margin of tongue' UBERON:0011877 by @paulacalipho in #3147
- Automatically import Biomappings cross-references by @gouttegd in #3141
- Add permission to post comment in forked PR from GH Action by @anitacaron in #3153
- Use SSSOM to correct local imports when needed. by @gouttegd in #3154
- Replace type definition for latin term synonyms by @cthoyt in #3113
- Replace type definition for dubious synonyms by @cthoyt in #3077
- Update github actions' version by @anitacaron in #3165
- Remove definitions with "." by @anitacaron in #2964
- add new term neck of pancreas by @paulacalipho in #3164
- Addresses #2920 NTR placental villous stroma by @aleixpuigb in #2949
- Addresses #3131 NTR placental chorionic villi terms by @aleixpuigb in #3166
- add 'lateral wall of nasal cavity' by @paulacalipho in #3167
- Remove the CARO bridges from the composite pipeline. by @gouttegd in #3168
- Fixes #3130 NTR intestinal lamina propria terms by @aleixpuigb in #3170
- Add LICENSE file. by @gouttegd in #3174
- Fixes #3105 NTR descending thin limb of loop of Henle subclasses by @aleixpuigb in #3173
- Allow to optionally keep disjointness axioms when building composite products. by @gouttegd in #3177
- Temporary fix for docker setup timeout by @anitacaron in #3182
- Only trigger QC when any file inside
srcfolder is changed by @anitacaron in #3184 - Fixes #3178 NTR placental terms by @aleixpuigb in #3179
- Turn
disjoint_union_overinto a proper ODK component by @gouttegd in #3185 - Update imports and bridges by @anitacaron in #3186
- 20240118 Release by @anitacaron in #3187
Full Changelog: v2023-12-08...v2024-01-18
Contributors
anitacaron, paulacalipho, and 3 other contributors
Assets 134
v2023-12-08 Release
What's Changed
- NTR: temporofacial region by @paulacalipho in #3072
- Update README.md file to direct to editors SOP file by @aleixpuigb in #3111
- Enforce taxon constraints by @gouttegd in #3102
- add new term 'tooth root apical papilla' by @paulacalipho in #3107
- Generate bridge files via SSSOM by @gouttegd in #3061
- Addresses #3096 NTR pulmonary venule by @aleixpuigb in #3098
- Refresh the local copy of PORO. by @gouttegd in #3118
- Small fixes to the new bridge pipeline by @gouttegd in #3122
- Addresses #2563 Tighten taxon constraints for 'skeletal muscle organ'… in #3123
- Addresses #2225 Edit "lacrimal drainage system" terms in #3119
- Update inadvertently added contributor annotations in #3125
- Fixes #3115 veins in pulmonary interlobular septum by @aleixpuigb in #3117
- Addresses #3088 change vascular object property by @aleixpuigb in #3106
- New composite pipeline by @gouttegd in #3129
- Remove rules to create
uberon-nif-merged. by @gouttegd in #3136 - Use features from latest Uberon plugin to generate composite-metazoan. by @gouttegd in #3135
- Remove UBERONTEMP cross-references. by @gouttegd in #3137
- Preliminary check for ontobot workflow by @hrshdhgd in #3121
- Fix the Allen ontologies used in composite-metazoan by @gouttegd in #3134
- Fix
refresh-external-resources. by @gouttegd in #3146 - Refresh imports by @aleixpuigb in #3149
- Release 2023-12-08 by @anitacaron in #3150
Full Changelog: v2023-10-27...v2023-12-08
Contributors
anitacaron, paulacalipho, and 3 other contributors
Assets 134
v2023-10-27 Release
What's Changed
- Fixes #2417 make neck general by @aleixpuigb in #3060
- 2972 Obsolete terms for insect anlagen. by @gouttegd in #3059
- Addresses #3068 NTR placental structures by @aleixpuigb in #3069
- Import ORCIDIO by @anitacaron in #3071
- Fixes #2970 pulmonary acinus edits by @aleixpuigb in #2971
- Add definition to definitive endoderm by @shawntanzk in #3075
- Fix 3D images links not available in
uberon.owlby @anitacaron in #3089 - Update ODK image to v1.4.3 in QC by @anitacaron in #3087
- Add explanatory comment after #3087 by @gouttegd in #3090
- Change
foaf:depicted_bytofoaf:depictionby @anitacaron in #3091 - Serialisation protégé 5.6.3 by @aleixpuigb in #3085
- Fixes #3081 Unsats caused by an issue involving tail by @aleixpuigb in #3094
- Add xrefs curated in Biomappings by @cthoyt in #2950
- Addresses #3086 NTR pulmonary interlobular septum by @aleixpuigb in #3095
- Make base for GO import by @anitacaron in #3097
- Fix composite unsats by @gouttegd in #3099
- Import OMO terms by @anitacaron in #3092
- Normalize
uberon-edit.oboby @anitacaron in #3100 - Replace type definition for abbreviation synonyms by @cthoyt in #3082
- Replace type definition for plural form synonyms by @cthoyt in #3083
- 2023-10-27 Release by @anitacaron in #3103
Full Changelog: v2023-09-05...v2023-10-27
Contributors
anitacaron, cthoyt, and 3 other contributors
Assets 131
v2023-09-05 Release
What's Changed
- Add secretory coil of eccrine sweat gland and def to duct of eccrine sweat gland by @paulacalipho in #2916
- Add parents to orphaned terms by @shawntanzk in #2988
- Update page by @bvarner-ebi in #3000
- Update c_revise_textual_def.md by @nicolevasilevsky in #3006
- Update b_adding_synonym.md by @nicolevasilevsky in #3007
- Update uberon-idranges.owl by @aleixpuigb in #3012
- Add broad synonyms pararenal lymph node, para-renal lymph node and perirenal lymph node to renal lymph node by @paulacalipho in #3011
- Do not (try to) rebuild the merged developmental stage ontologies. by @gouttegd in #3010
- Add hra_depiction_3d_images component by @anitacaron in #3015
- Update uberon-editor-sop.md by @bvarner-ebi in #3023
- Addresses #3020 Edit nociceptor --> 'nociceptor nerve ending' by @bvarner-ebi in #3021
- Update editing_guidelines.md re: MeSH cross-references by @bvarner-ebi in #3026
- Undo using dev in QC and change "see also" in synonym annotation to xref by @matentzn in #3029
- Update guidance on adding URL dbxrefs (uberon-editor-sop.md) by @bvarner-ebi in #3030
- Addresses #3035 Edit 'pulmonary neuroendocrine body' by @bvarner-ebi in #3036
- Add lower limb skin to hindlimb skin by @paulacalipho in #3034
- Fixes #3019 Removes logical definition of 'endocrine system' by @aleixpuigb in #3039
- Cleaning up makefile by @gouttegd in #3028
- Add skin terms by @paulacalipho in #3044
- NTR: saphenous vein smooth muscle tissue by @paulacalipho in #3048
- 3049 Classify 'endocrine system' as a 'non-connected functional system'. by @gouttegd in #3050
- Add related synonym pretibial to front hindlimb zeugopod by @paulacalipho in #3041
- Closes #3043 NTR neuroendocrine system by @aleixpuigb in #3045
- Add CODEOWNERS file to Uberon by @matentzn in #3038
- 3051 Fix 'insect pharynx' bogus ID and add ID format check by @gouttegd in #3052
- Changing contains to be location_of. See oborel/obo-relations#739 by @cmungall in #2998
- Update imports for release by @anitacaron in #3053
- 20230905 Release by @anitacaron in #3054
Full Changelog: v2023-07-25...v2023-09-05
Contributors
cmungall, anitacaron, and 6 other contributors