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Update and improve vessel DOSDP and crosswalk robot template #17

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merged 11 commits into from
Jun 4, 2024

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@anitacaron anitacaron commented Jun 3, 2024

This PR updates the source to use the 7th release and also improve the pattern and templates.

  • Add part of for the

  • Fix the references for the definition.

    • When available, only gets the PMID, instead of both PMID and DOI.
    • Convert wikipedia links to CURIE
    • Convert DOI links to CURIE
  • Fix the exact synonyms.

    • Use the FMA term label when it's different in the Vessel name
    • Add the FMA terms as xref in the vessel term
  • Add part of relationship in DOSDP to represent the location of the vessel in the body

  • Create term ID for the body sub part in the vessel organ crosswalk template

  • Remove double :: in the FMA terms that are coming from the vessel organ crosswalk source table

@anitacaron anitacaron changed the title Fix reference links Update and improve vessel DOSDP and crosswalk robot template Jun 4, 2024
@anitacaron anitacaron merged commit 38e0801 into main Jun 4, 2024
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@anitacaron anitacaron deleted the fix-ref branch June 4, 2024 17:02
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