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Add nan warning in get_bitinformation; Closes #200 #1303

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Add nan warning in get_bitinformation; Closes #200

Add nan warning in get_bitinformation; Closes #200 #1303

Workflow file for this run

.github/workflows/ci.yaml at 897fc03
name: CI
'on':
pull_request: null
workflow_dispatch: null
concurrency:
group: '${{ github.workflow }}-${{ github.ref }}'
cancel-in-progress: true
jobs:
detect-ci-trigger:
name: detect ci trigger
runs-on: ubuntu-latest
if: github.event_name == 'push' || github.event_name == 'pull_request'
outputs:
triggered: '${{ steps.detect-trigger.outputs.trigger-found }}'
steps:
- uses: actions/checkout@v4.1.1
with:
fetch-depth: 2
- uses: xarray-contrib/ci-trigger@v1.2.1
id: detect-trigger
with:
keyword: '[skip-ci]'
test:
name: pytest
runs-on: ubuntu-latest
needs: detect-ci-trigger
if: needs.detect-ci-trigger.outputs.triggered == 'false'
defaults:
run:
shell: 'bash -l {0}'
steps:
- uses: actions/checkout@v4.1.1
with:
fetch-depth: 0
- name: Set up conda
uses: conda-incubator/setup-miniconda@v3.0.1
with:
auto-update-conda: false
channels: conda-forge
miniforge-variant: Mambaforge
activate-environment: bitinfo
python-version: '3.11'
- name: Set up conda environment
run: |
mamba env update -f environment.yml
- name: Conda info
run: conda info
- name: Conda list
run: conda list
- name: install xbitinfo
run: |
pip install .
- name: Run tests
run: pytest
doctest:
name: doctests
runs-on: ubuntu-latest
defaults:
run:
shell: 'bash -l {0}'
steps:
- uses: actions/checkout@v4.1.1
- uses: conda-incubator/setup-miniconda@v3.0.1
with:
channels: conda-forge
miniforge-variant: Mambaforge
activate-environment: bitinfo
auto-update-conda: false
python-version: '3.11'
- name: Install conda dependencies
run: |
mamba env update -f environment.yml
- name: Install xbitinfo
run: |
python -m pip install -e .
- name: Conda info
run: conda info
- name: Conda list
run: conda list
- name: Run doctests
run: |
python -m pytest --doctest-modules xbitinfo --ignore xbitinfo/tests
test_notebooks:
name: notebooks
runs-on: ubuntu-latest
needs: detect-ci-trigger
if: needs.detect-ci-trigger.outputs.triggered == 'false'
defaults:
run:
shell: 'bash -l {0}'
steps:
- uses: actions/checkout@v4.1.1
- name: Set up conda
uses: conda-incubator/setup-miniconda@v3.0.1
with:
auto-update-conda: false
channels: conda-forge
miniforge-variant: Mambaforge
activate-environment: bitinfo
python-version: '3.11'
- name: Set up conda environment
run: |
mamba env update -f environment.yml
- name: Remove julia (issue #212)
run: |
conda remove julia
- name: Conda info
run: conda info
- name: Conda list
run: conda list
- name: install xbitinfo
run: |
pip install . --upgrade pip
- name: Test notebooks
run: >
python -m ipykernel install --user --name bitinfo
jupyter nbconvert --to html --execute docs/*.ipynb
--ExecutePreprocessor.kernel_name=bitinfo
install:
name: 'install xbitinfo, ${{ matrix.os }}'
runs-on: '${{ matrix.os }}'
needs: detect-ci-trigger
if: needs.detect-ci-trigger.outputs.triggered == 'false'
strategy:
fail-fast: false
matrix:
os:
- ubuntu-latest
- macos-latest
- windows-latest
steps:
- uses: actions/checkout@v4.1.1
with:
fetch-depth: 0
- name: Setup python
uses: actions/setup-python@v5.0.0
with:
python-version: '3.11'
- name: Set up Julia
uses: julia-actions/setup-julia@v1.9.5
with:
version: 1.7.1
- name: Install dependencies
run: |
pip install .[complete]
python -c "import xbitinfo"