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@ohmeta

ohmeta

The bioinformatics pipelines and genome catalogues for robust microbiome research.

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  1. metapi metapi Public

    A general metagenomics data mining system focus on robust microbiome research

    Python 55 17

  2. quantpi quantpi Public

    Microbiome profiling

    Python 16 2

  3. strainpi strainpi Public

    A pipeline for identify strains from metagenomics data

    Python 1

  4. simpi simpi Public

    Simulate metagenomics sequencing data for complex microbiome community of bacteriome, archaeome, virome, mycobiome, mobilome and resistome.

    Python

  5. panpi panpi Public

    Microbial pangenome analysis pipeline

Repositories

Showing 10 of 53 repositories
  • metapi Public

    A general metagenomics data mining system focus on robust microbiome research

    ohmeta/metapi’s past year of commit activity
    Python 55 GPL-3.0 17 2 0 Updated Sep 14, 2024
  • phanta Public Forked from bhattlab/phanta

    Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes

    ohmeta/phanta’s past year of commit activity
    Python 0 MIT 9 0 0 Updated Sep 4, 2024
  • quantpi Public

    Microbiome profiling

    ohmeta/quantpi’s past year of commit activity
    Python 16 GPL-3.0 2 0 0 Updated Jul 5, 2024
  • simpi Public

    Simulate metagenomics sequencing data for complex microbiome community of bacteriome, archaeome, virome, mycobiome, mobilome and resistome.

    ohmeta/simpi’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 28, 2024
  • qiimepi Public

    Snakemake version of QIIME2

    ohmeta/qiimepi’s past year of commit activity
    Python 1 0 0 0 Updated Apr 5, 2024
  • strainpi Public

    A pipeline for identify strains from metagenomics data

    ohmeta/strainpi’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Mar 21, 2024
  • rnapi Public

    RNA seq analysis pipeline

    ohmeta/rnapi’s past year of commit activity
    Python 3 1 0 0 Updated Mar 12, 2024
  • awesome-microbiome-datasets Public

    AMD: research power CPU

    ohmeta/awesome-microbiome-datasets’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 5, 2024
  • gtdb-rev Public
    ohmeta/gtdb-rev’s past year of commit activity
    0 0 0 0 Updated Oct 12, 2023
  • callpi Public

    Calling SNP, SNV, CNV, and other genotyping information from metagenomics sequencing data

    ohmeta/callpi’s past year of commit activity
    Python 0 0 0 0 Updated Aug 11, 2023
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