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@open2c

Open Chromosome Collective

README.md

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  1. cooler cooler Public

    A cool place to store your Hi-C

    Python 197 52

  2. cooltools cooltools Public

    The tools for your .cool's

    Jupyter Notebook 128 50

  3. pairtools pairtools Public

    Extract 3D contacts (.pairs) from sequencing alignments

    Python 94 33

  4. bioframe bioframe Public

    Genomic interval operations on Pandas DataFrames

    Python 169 27

  5. distiller-nf distiller-nf Public

    A modular Hi-C mapping pipeline

    Groovy 82 25

  6. polychrom polychrom Public

    Chromosome polymer simulations and in silico capture experiments

    Python 44 16

Repositories

Showing 10 of 28 repositories
  • polykit Public
    open2c/polykit’s past year of commit activity
    Python 6 MIT 3 1 0 Updated Jul 30, 2024
  • polychrom-hoomd Public
    open2c/polychrom-hoomd’s past year of commit activity
    Python 7 MIT 3 0 0 Updated Jul 30, 2024
  • assemblyinfo Public

    Genome assembly metadata

    open2c/assemblyinfo’s past year of commit activity
    Python 2 MIT 1 0 0 Updated Jul 29, 2024
  • cooler Public

    A cool place to store your Hi-C

    open2c/cooler’s past year of commit activity
    Python 197 BSD-3-Clause 52 30 (1 issue needs help) 3 Updated Jul 29, 2024
  • bioframe Public

    Genomic interval operations on Pandas DataFrames

    open2c/bioframe’s past year of commit activity
    Python 169 MIT 27 30 4 Updated Jul 29, 2024
  • coolpuppy Public

    A versatile tool to perform pile-up analysis on Hi-C data in .cool format.

    open2c/coolpuppy’s past year of commit activity
    Python 77 MIT 12 9 0 Updated Jul 22, 2024
  • MultiQC Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    open2c/MultiQC’s past year of commit activity
    JavaScript 2 GPL-3.0 594 2 0 Updated Jul 21, 2024
  • cooltools Public

    The tools for your .cool's

    open2c/cooltools’s past year of commit activity
    Jupyter Notebook 128 MIT 50 59 8 Updated Jul 4, 2024
  • quaich Public template

    snakemake pipeline for Hi-C post-processing

    open2c/quaich’s past year of commit activity
    Python 21 MIT 6 6 0 Updated Jun 27, 2024
  • .github Public
    open2c/.github’s past year of commit activity
    0 MIT 0 0 0 Updated Jun 20, 2024
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