lib: avoid duplicate mounts, #TASK-6445

opencb · Sep 27, 2024 · 909426a · 909426a
1 parent 403902b
commit 909426a
Showing 1 changed file with 6 additions and 2 deletions.
diff --git a/commons-lib/src/main/java/org/opencb/commons/utils/DockerUtils.java b/commons-lib/src/main/java/org/opencb/commons/utils/DockerUtils.java
@@ -70,9 +70,13 @@ public static String buildCommandLine(String image, List<AbstractMap.SimpleEntry
 
         if (inputBindings != null) {
             // Mount management (bindings)
+            Set<String> inputBindingSet = new HashSet<>();
             for (AbstractMap.SimpleEntry<String, String> binding : inputBindings) {
-                commandLine.append("--mount type=bind,source=\"").append(binding.getKey()).append("\",target=\"").append(binding.getValue())
-                        .append("\",readonly ");
+                if (!inputBindingSet.contains(binding.getKey())) {
+                    commandLine.append("--mount type=bind,source=\"").append(binding.getKey()).append("\",target=\"")
+                            .append(binding.getValue()).append("\",readonly ");
+                    inputBindingSet.add(binding.getKey());
+                }
             }
         }
         commandLine.append("--mount type=bind,source=\"").append(outputBinding.getKey()).append("\",target=\"")