Add image segmentation module

.github/dependabot.yml

@@ -0,0 +1,19 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
+
+version: 2
+updates:
+  - package-ecosystem: "docker"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+  - package-ecosystem: "pip"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"

.github/workflows/docs-build.yml

@@ -8,10 +8,10 @@ jobs:
     deploy:
         runs-on: ubuntu-latest
         steps:
-            - uses: actions/checkout@v3
+            - uses: actions/checkout@v4
               with:
                   fetch-depth: 0
-            - uses: actions/setup-python@v4
+            - uses: actions/setup-python@v5
               with:
                   python-version: "3.10"
             - name: Install GDAL
@@ -27,8 +27,6 @@ jobs:
                   pip install --no-cache-dir Cython
                   pip install -r requirements.txt -r requirements_dev.txt  -r requirements_docs.txt
                   pip install .
-            - name: Discover typos with codespell
-              run: codespell --skip="*.csv,*.geojson,*.json,*.js,*.html,*cff,*.pdf,./.git" --ignore-words-list="aci,acount,acounts,fallow,hart,hist,nd,ned,ois,wqs"
             - name: PKG-TEST
               run: |
                   python -m unittest discover tests/

.github/workflows/docs.yml

@@ -7,8 +7,8 @@ jobs:
     deploy:
         runs-on: ubuntu-latest
         steps:
-            - uses: actions/checkout@v3
-            - uses: actions/setup-python@v4
+            - uses: actions/checkout@v4
+            - uses: actions/setup-python@v5
               with:
                   python-version: 3.9
             - name: Install dependencies
@@ -17,10 +17,6 @@ jobs:
                   pip install --user --no-cache-dir Cython
                   pip install --user -r requirements.txt
                   pip install .
-            - name: Discover typos with codespell
-              run: |
-                  pip install codespell
-                  codespell --skip="*.csv,*.geojson,*.json,*.js,*.html,*cff,./.git" --ignore-words-list="aci,acount,acounts,fallow,hart,hist,nd,ned,ois,wqs,watermask"
             - name: PKG-TEST
               run: |
                   python -m unittest discover tests/

.github/workflows/macos.yml

@@ -14,25 +14,25 @@ jobs:
         strategy:
             fail-fast: false
             matrix:
-              os: ["macOS-latest"]
-              python-version: ["3.10"]
+                os: ["macOS-latest"]
+                python-version: ["3.10"]
         steps:
-          - name: Checkout code
-            uses: actions/checkout@v3
-      
-          - name: Set up Python
-            uses: actions/setup-python@v4
-            with:
-              python-version: ${{ matrix.python-version}}
-          - name: Install GDAL
-            run: |
-              brew install gdal
-          - name: Test GDAL installation
-            run: |
-              gdalinfo --version
-          - name: Install dependencies
-            run: |
-                python -m pip install --upgrade pip
-                pip install --no-cache-dir Cython
-                pip install -r requirements.txt
-                pip install .
+            - name: Checkout code
+              uses: actions/checkout@v4
+
+            - name: Set up Python
+              uses: actions/setup-python@v5
+              with:
+                  python-version: ${{ matrix.python-version}}
+            - name: Install GDAL
+              run: |
+                  brew install gdal
+            - name: Test GDAL installation
+              run: |
+                  gdalinfo --version
+            - name: Install dependencies
+              run: |
+                  python -m pip install --upgrade pip
+                  pip install --no-cache-dir Cython
+                  pip install -r requirements.txt
+                  pip install .

.github/workflows/pypi.yml

@@ -12,9 +12,9 @@ jobs:
         runs-on: ubuntu-latest
 
         steps:
-            - uses: actions/checkout@v3
+            - uses: actions/checkout@v4
             - name: Set up Python
-              uses: actions/setup-python@v4
+              uses: actions/setup-python@v5
               with:
                   python-version: "3.x"
             - name: Install dependencies

.github/workflows/ubuntu.yml

@@ -21,9 +21,9 @@ jobs:
                     - { os: ubuntu-latest, py: "3.11" }
         steps:
             - name: Checkout Code
-              uses: actions/checkout@v3
+              uses: actions/checkout@v4
             - name: Setup Python
-              uses: actions/setup-python@v4
+              uses: actions/setup-python@v5
               with:
                   python-version: ${{ matrix.config.py }}
             - name: Install GDAL
@@ -43,4 +43,3 @@ jobs:
             - name: PKG-TEST
               run: |
                   python -m unittest discover tests/
-

.github/workflows/windows.yml

@@ -11,7 +11,7 @@ jobs:
     test-windows:
         runs-on: windows-latest
         steps:
-            - uses: actions/checkout@v3
+            - uses: actions/checkout@v4
             - name: Install miniconda
               uses: conda-incubator/setup-miniconda@v2
               with:

.pre-commit-config.yaml

@@ -0,0 +1,29 @@
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.6.0
+    hooks:
+      - id: check-toml
+      - id: check-yaml
+      - id: end-of-file-fixer
+        types: [python]
+      - id: trailing-whitespace
+      - id: requirements-txt-fixer
+      - id: check-added-large-files
+        args: ["--maxkb=500"]
+
+  - repo: https://github.com/psf/black
+    rev: 24.4.2
+    hooks:
+      - id: black-jupyter
+        language_version: python3.11
+
+  - repo: https://github.com/codespell-project/codespell
+    rev: v2.3.0
+    hooks:
+      - id: codespell
+        args: ["--ignore-words-list=gis,timeseries", "--skip=*.json,*.csv"]
+
+  - repo: https://github.com/kynan/nbstripout
+    rev: 0.7.1
+    hooks:
+      - id: nbstripout