Upgrade FHIR SDK dependencies ⬆️

[ndegwamartin]

IMPORTANT: Where possible all PRs must be linked to a Github issue

Fixes #3421

Engineer Checklist

• I have written Unit tests for any new feature(s) and edge cases for bug fixes
• I have added any strings visible on UI components to the strings.xml file
• I have updated the CHANGELOG.md file for any notable changes to the codebase
• I have run ./gradlew spotlessApply and ./gradlew spotlessCheck to check my code follows the project's style guide
• I have built and run the FHIRCore app to verify my change fixes the issue and/or does not break the app
• I have checked that this PR does NOT introduce breaking changes that require an update to Content and/or Configs? If it does add a sample here or a link to exactly what changes need to be made to the content.

Code Reviewer Checklist

• I have verified Unit tests have been written for any new feature(s) and edge cases
• I have verified any strings visible on UI components are in the strings.xml file
• I have verifed the CHANGELOG.md file has any notable changes to the codebase
• I have verified the solution has been implemented in a configurable and generic way for reuseable components
• I have built and run the FHIRCore app to verify the change fixes the issue and/or does not break the app

[codecov]

Codecov Report

Attention: Patch coverage is 22.00000% with 117 lines in your changes missing coverage. Please review.

Project coverage is 27.1%. Comparing base (2f8055b) to head (9e3ed9e).
Report is 9 commits behind head on main.

Files with missing lines	Patch %	Lines
.../quest/ui/report/measure/MeasureReportViewModel.kt	1.9%	50 Missing ⚠️
...est/data/report/measure/MeasureReportRepository.kt	0.0%	37 Missing ⚠️
...er/fhircore/engine/data/local/DefaultRepository.kt	50.0%	13 Missing and 4 partials ⚠️
...st/ui/report/measure/worker/MeasureReportWorker.kt	0.0%	9 Missing ⚠️
...hircore/quest/ui/appsetting/AppSettingViewModel.kt	0.0%	2 Missing ⚠️
...core/engine/configuration/ConfigurationRegistry.kt	83.3%	0 Missing and 1 partial ⚠️
...re/engine/data/remote/shared/TokenAuthenticator.kt	75.0%	0 Missing and 1 partial ⚠️

Additional details and impacted files

@@            Coverage Diff            @@
##              main   #3423     +/-   ##
=========================================
- Coverage     27.2%   27.1%   -0.1%     
- Complexity     749     752      +3     
=========================================
  Files          275     277      +2     
  Lines        13940   14181    +241     
  Branches      2532    2572     +40     
=========================================
+ Hits          3794    3857     +63     
- Misses        9622    9786    +164     
- Partials       524     538     +14     

Flag	Coverage Δ
engine	63.8% <62.7%> (-0.6%)	⬇️
geowidget	15.4% <ø> (+2.8%)	⬆️
quest	5.6% <1.0%> (+0.1%)	⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines	Coverage Δ
...ster/fhircore/engine/p2p/dao/BaseP2PTransferDao.kt	71.9% <ø> (-0.5%)	⬇️
.../fhircore/engine/p2p/dao/P2PReceiverTransferDao.kt	89.4% <100.0%> (+1.2%)	⬆️
...er/fhircore/engine/p2p/dao/P2PSenderTransferDao.kt	72.4% <100.0%> (ø)
...gister/fhircore/engine/rulesengine/RulesFactory.kt	67.0% <100.0%> (+0.1%)	⬆️
...hircore/engine/util/extension/ResourceExtension.kt	67.6% <ø> (+<0.1%)	⬆️
...core/engine/configuration/ConfigurationRegistry.kt	68.3% <83.3%> (+0.7%)	⬆️
...re/engine/data/remote/shared/TokenAuthenticator.kt	75.0% <75.0%> (-1.2%)	⬇️
...hircore/quest/ui/appsetting/AppSettingViewModel.kt	2.2% <0.0%> (-0.1%)	⬇️
...st/ui/report/measure/worker/MeasureReportWorker.kt	0.0% <0.0%> (ø)
...er/fhircore/engine/data/local/DefaultRepository.kt	59.7% <50.0%> (-5.5%)	⬇️
... and 2 more

... and 8 files with indirect coverage changes

[f-odhiambo]

This PR works as expected for the use cases I have tested

[f-odhiambo]

CQL works in ZEIR but as Measure Reporting is broken

Exception thrown with measureUrl: https://fhir.labs.smartregister.org/fhir/Measure/ClinicAttendance   

java.lang.NullPointerException: id is required on all Elements of type: Measure.group.population

KM is looking for us to provide an ID as part of the params

  /** Loads resources from IGs listed in dependencies. */
  suspend fun loadResources(
    resourceType: String,
    url: String? = null,
    id: String? = null,
    name: String? = null,
    version: String? = null,
  ):

[f-odhiambo]

@dubdabasoduba @owais-vd Can we also test this on $apply ? Aug 5th
CC @ndegwamartin

NB. Canonical names to also use URL in the upcoming update on SDK

[FikriMilano]

Works fine, no issues so far! with 1.1.0-preview13.1-SNAPSHOT

We can merge #3428 after this PR was merged

[ndegwamartin]

CQL works in ZEIR but as Measure Reporting is broken

Exception thrown with measureUrl: https://fhir.labs.smartregister.org/fhir/Measure/ClinicAttendance   

java.lang.NullPointerException: id is required on all Elements of type: Measure.group.population

KM is looking for us to provide an ID as part of the params

  /** Loads resources from IGs listed in dependencies. */
  suspend fun loadResources(
    resourceType: String,
    url: String? = null,
    id: String? = null,
    name: String? = null,
    version: String? = null,
  ):

From my investigations it appears that the group population id is now mandatory so you will need to include it in your measure jsons - see this sample from the FHIR SDK

I could not find any HL7 FHIR documentation to back it as a required field but I did come across this extension in some IG which introduces it as an extension - https://build.fhir.org/ig/HL7/davinci-deqm/StructureDefinition-extension-populationReference.html

Not sure why the clinical reasoning library has made it mandatory.

[ellykits]

There are changes made to the FhirEngineImpl methods/functions. We will no longer need the IO dispatcher in the default repository class functions.

[f-odhiambo]

LGTM