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    45 repositories

    • TETTRIs-mapping-taxonomists

      Public
      TETTRIs WP3, task 3.2: automatic mapping of taxonomic expertise
      Jupyter Notebook
      •
      MIT License
      •2•0•9•0•Updated Dec 28, 2024Dec 28, 2024

    • guardgraph

      Public
      Species interactions graph for the GUARDEN project
      Python
      •
      MIT License
      •0•1•1•0•Updated Dec 23, 2024Dec 23, 2024

    • MIDSCalculator

      Public
      HTML
      •
      MIT License
      •1•5•16•0•Updated Nov 14, 2024Nov 14, 2024

    • GbifLitAnalyis

      Public
      For analysing the use specimens in literature
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • linkLitToGbifId

      Public
      A script to link publications citing GBIF downloads to specimens
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 22, 2024Sep 22, 2024

    • fowlPlayAnalyzer

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 21, 2024Sep 21, 2024

    • binfrastructure

      Public
      B-cubed infrastructure as code repository
      Python
      •
      MIT License
      •0•0•3•0•Updated Aug 19, 2024Aug 19, 2024

    • intercubos

      Public
      Analysis of overlap and interactions between several biodiversity data cubes
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 13, 2024Aug 13, 2024

    • Flask-B3Jobs

      Public
      Starting B3 container workflows through a Flask application
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 9, 2024Jun 9, 2024

    • volunteer-portal

      Public
      DigiVol (Biodiversity Volunteer Portal)
      JavaScript
      •15•1•0•1•Updated Jun 4, 2024Jun 4, 2024

    • dockshop

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated May 13, 2024May 13, 2024

    • irowine

      Public
      Combining vineyard and irokube bcubed hackathon projects
      Python
      •
      MIT License
      •0•1•0•0•Updated Apr 23, 2024Apr 23, 2024

    • b-c-hackathon

      Public template
      Optional template for biodiversity hackathons using Docker
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Feb 20, 2024Feb 20, 2024

    • gbifmids

      Public archive
      calculate mids level out of gbif dataset
      gbifmidstdwg
      HTML
      •0•1•0•0•Updated Dec 6, 2023Dec 6, 2023

    • BioSyncLink

      Public
      This a project under the Elixir Biohackathon Europe 2023. The aim of the project is to create bidirectional links between entities in the Global Genome Biodiversity Network (GGBN) collections and molecular sequences in the European Nucleotide Archive (ENA)
      TeX
      •
      MIT License
      •1•0•0•0•Updated Nov 3, 2023Nov 3, 2023

    • biohackathon-projects-2023

      Public
      Project code for BioHackathon Europe 2023.
      TeX
      •26•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • geonames_matching

      Public
      Match specimen record localities to geonames
      geonamesspecimensbgbase
      R
      •0•0•0•0•Updated Oct 30, 2023Oct 30, 2023

    • linkedTaxonomy

      Public
      Linking taxonomic names to specimens
      linked-datataxonomygbifbotany
      Jupyter Notebook
      •
      MIT License
      •0•1•8•1•Updated Oct 18, 2023Oct 18, 2023

    • collector_matching

      Public
      R
      •0•1•2•0•Updated Oct 8, 2023Oct 8, 2023

    • roundtrip

      Public
      Scripts to roundtrip agent attributions
      R
      •0•0•0•0•Updated Sep 13, 2023Sep 13, 2023

    • LtC-ER

      Public
      Experience report on implementing Latimer Core in the DiSSCo Flanders survey
      MIT License
      •1•0•0•0•Updated Aug 9, 2023Aug 9, 2023

    • powo_name_matching

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Aug 3, 2023Aug 3, 2023

    • demo1

      Public archive
      test123
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 25, 2023Jul 25, 2023

    • WorldFAIR

      Public
      Repository used for WorldFAIR data and analysis
      R
      •
      MIT License
      •1•0•0•0•Updated Jul 21, 2023Jul 21, 2023

    • tmplt_python

      Public template
      Template for Python projects
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 15, 2023Mar 15, 2023

    • biodev-docs

      Public
      Documentation and system managment of the biodev01 development server
      1•0•0•0•Updated Oct 11, 2022Oct 11, 2022

    • ala-cas-2.0

      Public
      ala-cas-2.0 based on https://github.com/mbohun/jasig-cas-4.0.1-overlay-template AND new design http://iamadamatteia.com/ala-login-2
      Java
      •12•0•0•1•Updated Aug 1, 2022Aug 1, 2022

    • userdetails

      Public
      Atlas user management
      Groovy
      •18•0•0•0•Updated Jul 25, 2022Jul 25, 2022

    • ala-bootstrap2

      Public
      This is a Grails Plugin to provide the basic set of web resources to correctly apply the current ala web theme based on bootstrap2
      CSS
      •
      Mozilla Public License 2.0
      •4•0•0•0•Updated May 23, 2022May 23, 2022

    • interactias

      Public
      To extract and study species interaction data for invasive species impact assessment
      Jupyter Notebook
      •
      MIT License
      •1•7•0•0•Updated Jan 1, 2022Jan 1, 2022