BojarLab

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8 repositories

glycowork
Public
Package for processing and analyzing glycans and their role in biology.
python open-source data-science machine-learning bioinformatics computational-biology molecular-biology glycomics glycans glycobiology
Jupyter Notebook
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MIT License
•13•57•0•0•Updated Dec 20, 2024Dec 20, 2024
GIFFLAR
Public
Glycan Informed Foundational Framework for Learning Abstract Representations, based on Combinatorial Complexes and Heterogeneous GNNs
glycan graph-neural-network pretraining heterogeneous-graph-neural-network glycobiology foundational-models combinatorial-complex
Python
•0•2•0•0•Updated Dec 18, 2024Dec 18, 2024
CandyCrunch
Public
Predicting glycan structure from LC-MS/MS data
machine-learning bioinformatics mass-spectrometry glycans python
Jupyter Notebook
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MIT License
•5•20•1•0•Updated Dec 5, 2024Dec 5, 2024
FragmentFactory
Public
Devising human interpretable diagnostic glycan fragments
Python
•0•0•1•0•Updated Jun 25, 2024Jun 25, 2024
MilkGlycans
Public archive
Code and data for constructing and analyzing biosynthetic networks from free milk oligosaccharides
Jupyter Notebook
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MIT License
•0•1•0•0•Updated Jun 8, 2023Jun 8, 2023
scGlycomics_b16_branching
Public
Predicting single-cell glycosylation features from scRNA-seq
machine-learning deep-learning glycans glycobiology
Jupyter Notebook
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MIT License
•2•0•0•0•Updated Jul 7, 2022Jul 7, 2022
LectinOracle
Public archive
Deep learning model to predict interactions between proteins and glycans [LEGACY; use glycowork implementation]
machine-learning bioinformatics glycobiology lectins
Jupyter Notebook
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MIT License
•4•9•0•0•Updated Aug 16, 2021Aug 16, 2021
SweetNet
Public archive
Graph convolutional neural networks for analyzing glycans [LEGACY; use glycowork implementation]
machine-learning bioinformatics glycans glycobiology
Jupyter Notebook
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MIT License
•6•18•1•0•Updated Mar 9, 2021Mar 9, 2021