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@CDPHE-bioinformatics Colorado Department of Public Health and Environment Bioinformatics

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    10 repositories

    • CDPHE-influenza

      Public
      Workflows and scripts for the assembly and analysis of influenza whole genome amplicon sequencing.
      bioinformaticswdlinfluenza
      WDL
      •
      GNU General Public License v3.0
      •1•2•2•1•Updated Oct 21, 2024Oct 21, 2024

    • CDPHE-SARS-CoV-2

      Public
      Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.
      bioinformaticswdlsars-cov-2
      WDL
      •
      GNU General Public License v3.0
      •0•5•12•0•Updated Oct 21, 2024Oct 21, 2024

    • CDPHE-H5-influenza

      Public
      Workflows and scripts for the assembly and analysis of H5 influenza
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • utils_workflows

      Public
      Useful workflows and tasks for CDPHE pipelines.
      bioinformatics
      WDL
      •
      Other
      •0•0•0•0•Updated Oct 2, 2024Oct 2, 2024

    • CDPHE-RSV

      Public
      Workflows and scripts for the assembly and analysis of RSV whole genome tiled amplicon sequencing.
      bioinformaticswdlrsv
      WDL
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Sep 23, 2024Sep 23, 2024

    • CDPHE-docker-builds

      Public
      Docker builds for CDPHE pipelines and workflows.
      bioinformatics
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 19, 2024Aug 19, 2024

    • CDPHE-Enterovirus

      Public
      Workflows and scripts for the assembly and analysis of enterovirus whole genome sequencing.
      bioinformaticswdlenterovirus
      WDL
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 19, 2024Jun 19, 2024

    • .github

      Public
      issue templates
      0•0•0•0•Updated May 14, 2024May 14, 2024

    • CDPHE-mpox

      Public
      Workflows and scripts for the assembly and analysis of mpox whole genome sequencing.
      bioinformaticswdlmpox
      WDL
      •0•0•0•0•Updated Apr 11, 2024Apr 11, 2024

    • CDPHE-publications

      Public
      Repository of code used in CDPHE publications.
      bioinformatics
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jun 9, 2023Jun 9, 2023