Repositories list

• CAJAL

  Public
  A Python package using Gromov-Wasserstein distance to compare cell shapes

  Python

  •

  MIT License

  •5•16•1•1•Updated Dec 24, 2024Dec 24, 2024

• ImmunoPheno

  Public
  MIT License

  •0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• ConDecon

  Public
  R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA-seq data.

  R

  •

  MIT License

  •2•12•0•0•Updated Oct 17, 2024Oct 17, 2024

• STvEA

  Public
  Spatially-resolved Transcriptomics via Epitope Anchoring

  immunohistochemical-imagessingle-cell-rna-seqsingle-cell-proteomics+ 1cytometry-analysis-pipeline

  R

  •

  GNU General Public License v3.0

  •4•18•1•0•Updated Apr 1, 2024Apr 1, 2024

• moduli

  Public
  R

  •1•0•0•0•Updated Oct 26, 2022Oct 26, 2022

• EPN_Classifier

  Public
  EPNClassifier assigns ependymal tumors profiled by bulk transcriptomics (RNA-seq or microarrays) into molecular subgroups.

  ependymomamolecular-subgroupsepn-tumor

  R

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Jun 2, 2022Jun 2, 2022

• TDA-TCGA

  Public
  R package for the identification of cancer-associated mutated genes using gene expression and mutation data.

  R

  •

  GNU General Public License v3.0

  •5•10•0•0•Updated Oct 29, 2021Oct 29, 2021

• RayleighSelection

  Public
  An R package for feature selection in topological spaces.

  machine-learningfeature-selectiontopological-data-analysis

  R

  •

  MIT License

  •3•11•0•0•Updated Aug 12, 2021Aug 12, 2021

• AdjacencyScore

  Public
  R package assessing co-localization of features in a graph

  R

  •0•1•0•0•Updated May 19, 2021May 19, 2021

• scTDA

  Public
  An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data

  single-cell-rna-seqtopological-data-analysis

  Python

  •

  GNU General Public License v3.0

  •21•51•4•1•Updated Jul 12, 2018Jul 12, 2018

• TARGet

  Public
  Topological inference of horizontal evolution from multiple sequence alignments

  genomicstopological-data-analysisrecombination

  C++

  •

  GNU General Public License v3.0

  •5•0•5•0•Updated Apr 30, 2017Apr 30, 2017