Repositories list

• MultiAgentCVD

  Public
  Context-Aware Multi-Agent AI System to Explore the Oxidative Stress in Cardiovascular Medicine

  MIT License

  •0•0•0•0•Updated Dec 8, 2024Dec 8, 2024

• IonChannel

  Public
  Ca regulating Ion Channels and Oxidative Stress as a Potential Link for the understanding of Cardiovascular Diseases: A data science approach.

  HTML

  •

  MIT License

  •0•1•0•0•Updated Nov 20, 2024Nov 20, 2024

• uniprotKG

  Public
  Exploration of Post-translational modifications (PTMs) through knowledge graph approach

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Nov 21, 2023Nov 21, 2023

• caseolap_lift

  Public
  Code associated with the paper, “A knowledge graph approach to elucidate the role of organellar pathways in disease via biomedical reports".

  Python

  •1•3•0•0•Updated Nov 20, 2023Nov 20, 2023

• AAC

  Public
  AAC KG

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Sep 15, 2023Sep 15, 2023

• caseolap_statistical_evaluation

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Feb 18, 2023Feb 18, 2023

• Biomedical-CaseOLAP-PD

  Public
  Summer 2022: A text mining application for PubMed publications. A biomedical application of CaseOLAP with improved entity name filtering, more readable code, and easier to re-run. This only uses Popularity (P) and Distinctiveness (D), not integrity.

  Jupyter Notebook

  •0•0•0•0•Updated Aug 24, 2022Aug 24, 2022

• cardiac_proteome_caseolap

  Public
  Defining relationships among functional cardiac subproteomes and heart disease

  Jupyter Notebook

  •0•0•0•0•Updated Jul 27, 2022Jul 27, 2022

• caseolap

  Public
  CaseOLAP: A cloud computing platform for phrase mining. This consists of downloading, parsing, and indexing of data, text-cube creation, entity count with search functionality, and caseOLAP score calculation.

  nlptext-miningnlp-machine-learning+ 1phrase-extraction

  Python

  •

  MIT License

  •3•7•0•0•Updated May 12, 2022May 12, 2022

• covid-cvd-knowledgegraph

  Public
  Understanding the Molecular Interface of Heart Disease and COVID-19: A Data Science Approach with Knowledgegraph

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated May 4, 2022May 4, 2022

• cvd-sunburst

  Public
  Sunbrust plot of CVD MeSH count. The sunbrust plot is created by implementing d3.js package with the data obtained from MESH to PMID mapping.

  Jupyter Notebook

  •0•0•0•0•Updated Apr 13, 2022Apr 13, 2022

• covid-cvd

  Public
  Understanding the Molecular Interface of Cardiovascular Disease and COVID-19: A Data Science Approach

  pythontext-miningreactome-pathway+ 3molecular-mechanismcovid-19cardiovascular-diseases

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Oct 28, 2021Oct 28, 2021

• caseolap.github.io

  Public
  CaseOLAP Website [Front line]. This demo website consists of general information about CaseOLAP and it's implementation as well as sample results.

  javascriptcsshtml+ 1d3js

  HTML

  •1•0•0•1•Updated Aug 2, 2021Aug 2, 2021

• brrr

  Public
  BRRR - Biomedical Reference Range Resources

  GNU General Public License v3.0

  •1•0•0•0•Updated Aug 18, 2020Aug 18, 2020

• docs

  Public
  Documentation for CaseOLAP platform. This documents provides a demo for sample application.

  pythonmkdocs

  0•0•0•0•Updated Jun 11, 2020Jun 11, 2020

• caseolap-pipelines

  Public
  Demo of pipelines in CaseOLAP platform and sample data. These pipelines consists of downloading, parsing, indexing of data, text-cube creation and search of entities.

  pythonelasticsearchautophrase

  HTML

  •0•2•0•0•Updated Sep 25, 2019Sep 25, 2019

• mesh2pmid-mapping

  Public
  Demo of MeSH to PMID MApping. This mapping accounts the number of documents associated with specific MESH descriptors. The obtained mapping data are visualized implementing D3.js library.

  pythonhtmld3js

  HTML

  •0•0•0•0•Updated Apr 12, 2019Apr 12, 2019

• chemicaltree

  Public
  Demo of Chemical and Drugs Tree (MeSH). These trees are visualized implementing D3.js library.

  htmld3js

  HTML

  •

  Other

  •1•0•0•0•Updated Mar 27, 2019Mar 27, 2019

• reactom-web-api

  Public
  Implementing Reactom API to visualize Reactom Pathways in web page.

  htmlapijs

  HTML

  •0•0•0•0•Updated Jan 24, 2019Jan 24, 2019

• dataviz

  Public
  Web app to visualization of CaseOLAP Score for entity category association.

  JavaScript

  •0•0•0•0•Updated Sep 14, 2018Sep 14, 2018

• AutoPhrase

  Public
  AutoPhrase: Automated Phrase Mining from Massive Text Corpora

  C++

  •

  Apache License 2.0

  •276•0•0•0•Updated Jul 17, 2018Jul 17, 2018

• pubtator

  Public
  Retrieve and process PubTator annotations

  Python

  •

  Other

  •9•0•0•0•Updated Jul 13, 2017Jul 13, 2017