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    • daylily

      Public
      A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
      WDL
      GNU General Public License v3.0
      120250Updated Dec 22, 2024Dec 22, 2024
    • bloom

      Public
      Templated Abstract Polymorphic (and opinionated) LIMS
      Python
      Mozilla Public License 2.0
      10250Updated Dec 18, 2024Dec 18, 2024
    • .github

      Public
      github profile README.md
      MIT License
      0000Updated Dec 12, 2024Dec 12, 2024
    • Service to return images of text where the input text can have font, font size and color set
      Python
      MIT License
      0100Updated Dec 2, 2024Dec 2, 2024
    • snakemake

      Public
      This is the development home of the workflow management system Snakemake. For general information, see
      HTML
      MIT License
      562000Updated Nov 27, 2024Nov 27, 2024
    • RNA-seq workflow using STAR and DESeq2
      Python
      MIT License
      205000Updated Oct 24, 2024Oct 24, 2024
    • Minimal http server ( fastapi jinja2 supabase oauth2 )
      HTML
      MIT License
      0000Updated Oct 23, 2024Oct 23, 2024
    • slurm executor for use by snakemake when running on the slurm flavor which is unique to aws parallel cluster slrum pcluster.
      Python
      MIT License
      0000Updated Oct 22, 2024Oct 22, 2024
    • A Snakemake executor plugin for submitting jobs to a SLURM cluster
      Python
      MIT License
      21100Updated Oct 21, 2024Oct 21, 2024
    • Shell
      MIT No Attribution
      7000Updated Oct 19, 2024Oct 19, 2024
    • transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation
      Python
      GNU General Public License v3.0
      13000Updated Oct 9, 2024Oct 9, 2024
    • Slim fastapi / jinja2 web application to expose metapub command line functionality.
      Python
      MIT License
      0000Updated Sep 15, 2024Sep 15, 2024
    • DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
      Python
      BSD 3-Clause "New" or "Revised" License
      730000Updated Sep 2, 2024Sep 2, 2024
    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      Apache License 2.0
      139000Updated Aug 30, 2024Aug 30, 2024
    • metapub

      Public
      Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
      Python
      Apache License 2.0
      20000Updated Aug 16, 2024Aug 16, 2024
    • python wrapper for the xcures REST api
      Python
      MIT License
      0000Updated Jun 25, 2024Jun 25, 2024
    • A simple Snakemake profile for Slurm without --cluster-config
      Shell
      Creative Commons Zero v1.0 Universal
      18000Updated Jun 20, 2024Jun 20, 2024
    • zebra_day

      Public
      Zebra Label Printing library & API (for network connected printers). Manage 100s of printers and ZPL label templates in one place.
      Python
      GNU General Public License v3.0
      2921Updated May 9, 2024May 9, 2024
    • Simple tool to standardize the indentation of jinja2 files.
      Python
      0000Updated Dec 22, 2023Dec 22, 2023
    • Playing around with merging images taken of the outside of a tube.
      Python
      MIT License
      0100Updated Nov 24, 2023Nov 24, 2023
    • Python Module Interfacing w/The FedEx Tracking API
      Python
      MIT License
      0200Updated Nov 4, 2023Nov 4, 2023
    • Slim Python yaml Config Manager
      Python
      MIT License
      0000Updated Nov 1, 2023Nov 1, 2023
    • tmhmm.py

      Public
      A transmembrane helix finder in Python 3.
      Python
      MIT License
      12000Updated Oct 4, 2023Oct 4, 2023
    • bulk_sms

      Public
      MIT License
      0000Updated Jun 18, 2023Jun 18, 2023
    • gspread

      Public
      Google Sheets Python API
      Python
      MIT License
      950000Updated May 16, 2023May 16, 2023
    • C++
      Other
      2000Updated Apr 30, 2023Apr 30, 2023
    • Learn how to accept a payment from customers around the world with a variety of payment methods.
      JavaScript
      MIT License
      511000Updated Mar 30, 2023Mar 30, 2023
    • Cronicle V2 (Orchestra) community prototype
      JavaScript
      Other
      28000Updated Feb 26, 2023Feb 26, 2023
    • HGTector

      Public
      HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
      Python
      BSD 3-Clause "New" or "Revised" License
      35000Updated Jan 21, 2023Jan 21, 2023
    • sambamba

      Public
      Tools for working with SAM/BAM data
      D
      GNU General Public License v2.0
      107000Updated Jan 19, 2023Jan 19, 2023