EPFL Center for Imaging

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36 repositories

depalma-napari-omero
Public
Napari user interface with connection to OMERO.
cancer-imaging-research
Rust
•
GNU Affero General Public License v3.0
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
napari-label-focus
Public
Easily focus the view on selected elements from a Labels layer.
napari-plugin
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Nov 21, 2024Nov 21, 2024
napari-splinebox
Public
A napari plugin to create splines.
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Oct 17, 2024Oct 17, 2024
splinebox
Public
A python package for fitting splines.
Python
•
BSD 3-Clause "New" or "Revised" License
•0•14•6•0•Updated Oct 16, 2024Oct 16, 2024
mousetumornet
Public
A model for lung tumor nodules segmentation in mice CT scans.
cancer-imaging-research image-segmentation napari-plugin nnunet-v2
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Oct 14, 2024Oct 14, 2024
image-analysis-field-guide
Public
Scientific image analysis resources and examples.
image-analysis jupyter-book
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•0•4•0•0•Updated Sep 14, 2024Sep 14, 2024
mouselungseg
Public
Lungs segmentation in mice CT scans
yolo cancer-imaging-research image-segmentation napari-plugin ultralytics
Python
•
GNU Affero General Public License v3.0
•0•0•0•0•Updated Aug 23, 2024Aug 23, 2024
mousetumortrack
Public
Tracking tumor nodules in mice CT scans.
tracking cancer-imaging-research
Python
•
GNU Affero General Public License v3.0
•0•0•0•0•Updated Aug 23, 2024Aug 23, 2024
napari-adaptive-painting
Public
Propagate label annotations in Napari.
napari-plugin image-annotation-tool
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Aug 22, 2024Aug 22, 2024
Mito_nucleoid_distances
Public
Code for measuring the distance between nucleoids on mitochondira
Python
•
MIT License
•0•0•0•0•Updated Aug 20, 2024Aug 20, 2024
dask
Public
Parallel computing with task scheduling
Python
•
BSD 3-Clause "New" or "Revised" License
•1.7k•0•0•0•Updated Aug 19, 2024Aug 19, 2024
basics-GPU-image-proc
Public
Material for the imaging lunch "Basics of gpu acceleration for image processing
Jupyter Notebook
•
MIT License
•0•1•0•0•Updated Aug 13, 2024Aug 13, 2024
nellie
Public
Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
Python
•
Other
•4•0•0•0•Updated Aug 12, 2024Aug 12, 2024
imaging-plaza-runnable-examples
Public
Runnable examples for the Imaging Plaza platform.
0•0•0•0•Updated Aug 7, 2024Aug 7, 2024
api-py-algos
Public
API to run Python-based image processing algorithms
Python
•
GNU General Public License v3.0
•0•1•0•0•Updated Jun 17, 2024Jun 17, 2024
ij-plugin-pyalgos
Public
ImageJ/Fiji plugin to run Python-based image processing algorithms
Java
•
GNU General Public License v3.0
•0•0•0•0•Updated Jun 17, 2024Jun 17, 2024
qupath-extension-pyalgos
Public
Qupath extension to run Pyhton-based image processing algorithms
Java
•
GNU General Public License v3.0
•0•1•0•0•Updated Jun 17, 2024Jun 17, 2024
ImagingLunch_ImagesInPython
Public
Jupyter Notebook
•0•2•0•0•Updated Jun 12, 2024Jun 12, 2024
pyxu-ldct-reader
Public
Python
•
MIT License
•0•1•0•0•Updated Jun 6, 2024Jun 6, 2024
napari-melt-pool-tracker
Public
Napari plugin for tracking the width and depth of the melt pool and keyhole in x-ray images of laser powder bed fusion experiments.
Python
•
BSD 3-Clause "New" or "Revised" License
•1•1•0•0•Updated May 28, 2024May 28, 2024
napari-z-plotter
Public
Interactively plot the image intensity along the depth axis of a 3D image dataset.
napari-plugin
Python
•
BSD 3-Clause "New" or "Revised" License
•1•1•0•0•Updated May 24, 2024May 24, 2024
pyxu-tutorial
Public
Material accompanying the Pyxu tutorial presentation
Jupyter Notebook
•
BSD 3-Clause "New" or "Revised" License
•0•2•0•0•Updated Mar 26, 2024Mar 26, 2024
napari-rembg
Public
AI-based image segmentation in Napari.
image-segmentation napari-plugin rembg segment-anything-model
Python
•
BSD 3-Clause "New" or "Revised" License
•0•1•1•0•Updated Feb 17, 2024Feb 17, 2024
pyxu-cone-beam
Public
Computational Tomography Suite for Cone Beam X-Ray data using Pyxu.
Python
•
MIT License
•0•2•0•0•Updated Jan 29, 2024Jan 29, 2024
napari-floodfill
Public
Interactive object annotation in Napari using a flood fill tool.
image-processing napari-plugin
Python
•
BSD 3-Clause "New" or "Revised" License
•0•1•0•0•Updated Jan 17, 2024Jan 17, 2024
napari-orientationpy
Public
Analyze orientations in 2D, 3D, and RGB images in Napari.
image-processing napari-plugin
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 17, 2024Jan 17, 2024
napari-woggle-opacity
Public
Dynamically change layer opacity in Napari.
napari-plugin
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 12, 2024Jan 12, 2024
napari-live-histogram
Public
Display the image histogram in Napari.
napari-plugin
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 12, 2024Jan 12, 2024
napari-remove-objects
Public
A simple tool to remove objects in a Labels layer in Napari by clicking on them.
napari-plugin
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 12, 2024Jan 12, 2024
napari-magic-wand
Public
"Magic wand" annotation in Napari.
image-annotation napari-plugin
Python
•
BSD 3-Clause "New" or "Revised" License
•0•1•0•0•Updated Jan 11, 2024Jan 11, 2024