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@EpistasisLab Epistasis Lab at Cedars Sinai

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    76 repositories

    • tpot2

      Public
      A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
      data-sciencemachine-learningautomationrandom-forestscikit-learnaimlmodel-selectionhyperparameter-optimizationfeature-engineeringautoml
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •29•213•49•2•Updated Dec 19, 2024Dec 19, 2024

    • escargot

      Public
      Python
      •
      MIT License
      •0•5•0•0•Updated Dec 11, 2024Dec 11, 2024

    • pmlbr

      Public
      pmlb is an R interface to the Penn Machine Learning Benchmarks data repository
      R
      •
      Other
      •2•8•0•0•Updated Nov 4, 2024Nov 4, 2024

    • PAGER

      Public
      PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies and epistasis investigation. PAGER dynamically encodes genetic variants or multi-locus genotypes (MLG) by normalizing mean phenotypic differences between genotype/MLG classes.
      encodinggwasgeneticsepistasisadditive-modelsheterosisgenetic-interactionsdominance-analysisgenotype-to-phenotypenon-additive-effects
      Python
      •1•2•0•0•Updated Oct 16, 2024Oct 16, 2024

    • Aliro

      Public
      Aliro: AI-Driven Data Science
      aimlalzheimers-diseaseautomlalzheimeralzheimersniaadspag066833u01ag066833
      JavaScript
      •
      GNU General Public License v3.0
      •63•227•58•32•Updated Oct 7, 2024Oct 7, 2024

    • SynTwin

      Public
      SynTwin: A graph-based approach for predicting clinical outcomes using digital twins derived from synthetic patients
      Jupyter Notebook
      •0•1•0•0•Updated Oct 2, 2024Oct 2, 2024

    • pmlb

      Public
      PMLB: A large, curated repository of benchmark datasets for evaluating supervised machine learning algorithms.
      Python
      •
      MIT License
      •139•808•16•4•Updated Sep 10, 2024Sep 10, 2024

    • AlzKB

      Public
      aimlalzheimers-diseaseautomlalzheimeralzheimersniaadspag066833u01ag066833
      Python
      •2•11•0•0•Updated Sep 3, 2024Sep 3, 2024

    • latent_phenotype_project

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Aug 9, 2024Aug 9, 2024

    • PSB25_ADSP_GIG

      Public
      0•0•0•0•Updated Aug 1, 2024Aug 1, 2024

    • tpot

      Public
      A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
      automationaimlmodel-selectionhyperparameter-optimizationgradient-boostingautomated-machine-learningparameter-tuningalzheimeralzheimersnia
      Python
      •
      GNU Lesser General Public License v3.0
      •1.6k•9.8k•283•13•Updated Jul 25, 2024Jul 25, 2024

    • AlzKB-updates

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Jul 23, 2024Jul 23, 2024

    • KRAGEN

      Public
      Software to implement GoT with a weviate vectorized database
      Python
      •
      MIT License
      •41•637•18•1•Updated Jun 12, 2024Jun 12, 2024

    • STAR_outliers

      Public
      Python
      •
      MIT License
      •1•1•1•0•Updated May 18, 2024May 18, 2024

    • tpot2_imputetest

      Public
      Testing complex imputation methods on a Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •29•1•0•0•Updated May 1, 2024May 1, 2024

    • tpot2-feedstock

      Public
      A conda-smithy repository for tpot2.
      BSD 3-Clause "New" or "Revised" License
      •4•0•0•0•Updated Apr 24, 2024Apr 24, 2024

    • GPT4_and_Review

      Public
      Using GPT-4 to write a scientific review article: a pilot evaluation study
      Python
      •0•3•0•0•Updated Apr 10, 2024Apr 10, 2024

    • autoqtl

      Public
      Automated Quantitative Trait Locus Analysis (AutoQTL)
      Python
      •
      GNU General Public License v3.0
      •3•8•0•0•Updated Mar 5, 2024Mar 5, 2024

    • epistasis_detection

      Public
      Implementation of an efficient algorithm to compute linear regression models for epistasis that permit varied genetic encodings (penetrance functions) of the interactions of loci and provide statistical evidence for epistasis.
      Jupyter Notebook
      •1•2•0•0•Updated Feb 29, 2024Feb 29, 2024

    • EBIC.jl

      Public
      EBIC - a biclustering algorithm in Julia
      Julia
      •
      MIT License
      •0•7•0•0•Updated Jan 24, 2024Jan 24, 2024

    • aliroed-pi-gen

      Public
      Tool used to create the AliroEd Raspberry Pi OS images
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •1.7k•0•0•0•Updated Jan 11, 2024Jan 11, 2024

    • PSB2024_spine

      Public
      Python
      •0•0•0•0•Updated Sep 25, 2023Sep 25, 2023

    • tpot2_gptp_experiments

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jul 31, 2023Jul 31, 2023

    • scikit-mdr

      Public
      A sklearn-compatible Python implementation of Multifactor Dimensionality Reduction (MDR) for feature construction.
      Python
      •
      MIT License
      •26•126•11•0•Updated Jun 14, 2023Jun 14, 2023

    • tpot2-test

      Public
      A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.
      Jupyter Notebook
      •
      GNU Lesser General Public License v3.0
      •29•0•0•0•Updated May 31, 2023May 31, 2023

    • STAR_outliers_figure_and_table_generation

      Public
      Python
      •0•0•0•0•Updated Apr 14, 2023Apr 14, 2023

    • exploration-trie-tpot

      Public
      Comparison of evolutionary algorithms within TPOT using a trie to determine their exploratory nature
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Mar 8, 2023Mar 8, 2023

    • scikit-rebate

      Public
      A scikit-learn-compatible Python implementation of ReBATE, a suite of Relief-based feature selection algorithms for Machine Learning.
      pythondata-sciencefeature-selection
      Python
      •
      MIT License
      •73•415•15•3•Updated Feb 10, 2023Feb 10, 2023

    • aliro-imager

      Public
      C
      •
      Other
      •264•0•0•0•Updated Jan 13, 2023Jan 13, 2023

    • DTox

      Public
      A knowledge-guided deep learning model for prediction and interpretation of drug toxicity
      HTML
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Oct 13, 2022Oct 13, 2022