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@Functional-Genomics EBI Functional Genomics Group

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    9 repositories

    • scRNA-seq_python_course_2024

      Public
      Course materials for EBI course scRNA-seq analysis in Python, 2024
      Jupyter Notebook
      •4•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • scrnaseq_python_2023

      Public
      Materials for the EBI course "Single-cell RNA-seq analysis using Python 2023"
      Jupyter Notebook
      •2•6•0•0•Updated Nov 17, 2023Nov 17, 2023

    • CATD

      Public
      CATD: Critical Assessment of Transcriptomics Deconvolution
      benchmarkingscrna-seqdeconvolutionbulk-rna-seq
      R
      •
      MIT License
      •0•1•0•0•Updated Sep 16, 2021Sep 16, 2021

    • cross-species-cellgroup-comparison

      Public
      Development project for comparing cell groupings between experiments across species
      Python
      •2•1•0•0•Updated Mar 26, 2021Mar 26, 2021

    • eQTL

      Public
      eQTL analysis pipeline
      Python
      •1•4•6•0•Updated Jul 3, 2019Jul 3, 2019

    • single_lib_qc

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 1, 2018Mar 1, 2018

    • atlas_gsa

      Public
      Gene set analysis based on fisher exact test
      R
      •
      GNU Lesser General Public License v3.0
      •2•2•0•0•Updated Oct 26, 2017Oct 26, 2017

    • pancancer

      Public
      Pancancer related code and aux. data.
      R
      •
      GNU Lesser General Public License v3.0
      •2•4•0•0•Updated May 3, 2017May 3, 2017

    • TeachingMaterial

      Public
      RNA-seq data analysis practical
      44•1•0•0•Updated Nov 26, 2015Nov 26, 2015