Repositories list

• IowaWound

  Public
  Iowa Wound Pain analyses 2020

  R

  •0•0•0•0•Updated May 15, 2024May 15, 2024

• HmmUFOtu

  Public
  An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

  phylogeneticsdirichlet-process-mixturesotu+ 5phylogenetic-placementhmmmixture-modeltaxonomy-assignmentjplace

  C++

  •

  GNU General Public License v3.0

  •9•10•11•1•Updated Apr 8, 2024Apr 8, 2024

• DFUStrainsWGS

  Public
  This repo contains scripts related to the whole genome sequencing of >200 isolates of S. aureus from people with diabetic foot ulcers (DFU100 project)

  Shell

  •0•0•0•0•Updated Dec 17, 2023Dec 17, 2023

• Staphyloxanthin

  Public
  Code repository for Staphyloxanthin paper

  R

  •0•0•0•0•Updated Sep 27, 2023Sep 27, 2023

• AlignerBoost

  Public
  AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework

  Java

  •2•11•2•0•Updated Mar 1, 2022Mar 1, 2022

• EAGenomeAssembly

  Public
  Breaking out the assembly pipeline into its own repo (mapping files are still located in ClubGrice/mapping_files until publishable)

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Feb 7, 2022Feb 7, 2022

• MSGseqTK

  Public
  A Metagenomics Shotgun Sequencing Toolkit for NGS read mapping and cleaning based on a novel incremental and parallel FMD-index algorithm

  C++

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jan 18, 2022Jan 18, 2022