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@HGGM-LIM Laboratorio de Imagen Médica (Medical Imaging Laboratory)

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    28 repositories

    • Chimera

      Public
      Chimera Algorithm, a novel optimizer able to generate and evolve the architecture of feedforward Convolutional Neural Networks based on the adaptation of the Artificial Bee Colony Algorithm to work within an Evolutionary Computation framework
      Jupyter Notebook
      •0•0•0•0•Updated Apr 10, 2024Apr 10, 2024

    • SWiM

      Public
      Vertex-wise Sulcal Width Map Estimation
      CMake
      •
      MIT License
      •0•0•0•0•Updated Oct 10, 2022Oct 10, 2022

    • ABLE

      Public
      Automated Brain Lines Extraction Based on Laplacian Skeletonization
      MATLAB
      •
      MIT License
      •0•1•0•0•Updated Aug 30, 2022Aug 30, 2022

    • HGGM-Covid-Opentrons

      Public
      Python
      •1•0•0•0•Updated Sep 9, 2020Sep 9, 2020

    • ANTs

      Public
      Advanced Normalization Tools (ANTs)
      C++
      •
      Other
      •381•0•0•0•Updated Dec 22, 2017Dec 22, 2017

    • Motion-Estimation-Compressed-Sensing-MRI

      Public
      MATLAB
      •
      GNU General Public License v2.0
      •5•3•0•0•Updated Oct 4, 2017Oct 4, 2017

    • Split-Bregman-ST-Total-Variation-MRI

      Public
      Split Bregman spatiotemporal total variation for MRI
      MATLAB
      •
      GNU General Public License v2.0
      •7•13•0•0•Updated Sep 30, 2017Sep 30, 2017

    • Split_Bregman_PICCS_fMRI

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •4•3•0•0•Updated Jul 25, 2017Jul 25, 2017

    • phardiviewer

      Public
      C++
      •0•1•0•0•Updated Jul 11, 2017Jul 11, 2017

    • fmrat

      Public
      MATLAB
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jul 10, 2017Jul 10, 2017

    • Efficient-ART-Split-Bregman-Reconstruction

      Public
      MATLAB code for an iterative reconstruction method that alternates a computationally efficient linear solver (ART) with a fast denoising step based on the Split Bregman formulation
      MATLAB
      •
      GNU General Public License v3.0
      •12•20•0•0•Updated Apr 24, 2017Apr 24, 2017

    • TLS

      Public
      Pedro & Blanca
      C++
      •0•0•1•0•Updated Feb 24, 2017Feb 24, 2017

    • compressed-sensing-diffusion-lung-MRI

      Public
      Compressed-sensing-diffusion-lung-MRI
      MATLAB
      •
      GNU General Public License v2.0
      •8•3•0•0•Updated Feb 7, 2017Feb 7, 2017

    • ConoSurf

      Public
      An open-source 3D scanning system based on a conoscopic holography device for acquiring surgical surfaces
      Python
      •0•1•0•0•Updated Nov 21, 2016Nov 21, 2016

    • BiiGOptitrack

      Public
      C++
      •2•3•0•0•Updated Sep 26, 2016Sep 26, 2016

    • prior-motion-reconstruction-CT

      Public
      Data, code and results for prior- and motion-based reconstruction (PRIMOR) method for respiratory gated CT
      MATLAB
      •
      GNU General Public License v2.0
      •7•14•0•0•Updated Aug 25, 2016Aug 25, 2016

    • NIR

      Public
      Code for Asier Thesis
      C++
      •0•0•0•0•Updated May 11, 2016May 11, 2016

    • PLUS-LIM

      Public
      PLUS version from LIM
      C++
      •0•1•0•0•Updated Feb 29, 2016Feb 29, 2016

    • PlusLIM

      Public
      C++
      •0•0•0•0•Updated Feb 26, 2016Feb 26, 2016

    • Split-Bregman-Total-Variation-Jacobian-Matrix

      Public
      Constrained total variation image reconstruction problem solved using the Split Bregman formulation where the Jacobian is provided as a matrix
      MATLAB
      •
      GNU General Public License v2.0
      •9•13•0•0•Updated Jan 28, 2016Jan 28, 2016

    • imagej-perfusion-plugin

      Public
      Dynamic magnetic resonance perfusion quantification plugin.
      Java
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jan 25, 2016Jan 25, 2016

    • respiratory-gated-CT

      Public
      MATLAB
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Dec 2, 2015Dec 2, 2015

    • PointSetProcessing

      Public
      A set of classes (vtkPointSetOutlierRemoval, vtkPointSetNormalEstimation, vtkPointSetNormalOrientation, vtkPointSetCurvatureEstimation, vtkEuclideanMinimumSpanningTree, and vtkRiemannianGraphFilter) to enable several basic operations on point sets. These classes are implemented as VTK filters.
      C++
      •9•0•0•0•Updated Sep 17, 2015Sep 17, 2015

    • respiratory-gatet-ct

      Public
      MATLAB
      •
      GNU General Public License v2.0
      •0•0•0•0•Updated Feb 26, 2015Feb 26, 2015

    • jclustering

      Public
      jClustering is a dynamic image clustering framework for ImageJ. It provides a public API for implementing new clustering algorithms and several implementations.
      Java
      •
      GNU General Public License v3.0
      •6•11•0•0•Updated Sep 7, 2014Sep 7, 2014

    • tracerkinetic

      Public
      This R package implements compartmental models and linear approximations needed to perform kinetic analysis on dynamic medical images. The provided functions use the tissue time-activity curves, the input function and the frame times as input, and return the kinetic parameters and the estimated errors.
      R
      •
      GNU General Public License v3.0
      •1•8•1•0•Updated Jun 28, 2014Jun 28, 2014

    • limtools

      Public
      ImageJ plugins and macros developed at the Medical Imaging Laboratory
      Java
      •
      GNU General Public License v3.0
      •1•6•1•0•Updated Apr 16, 2014Apr 16, 2014

    • j.cmpb.2013.04.010

      Public
      Source code for paper "Automatic TAC extraction from dynamic cardiac PET imaging using iterative correlation from a population template"
      GNU General Public License v2.0
      •1•1•0•0•Updated Feb 3, 2014Feb 3, 2014