Repositories list

• upptime

  Public
  Uptime monitor and status page for IDR, powered by @upptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •0•0•14•0•Updated Jan 8, 2025Jan 8, 2025

• idr-metadata

  Public
  Curated metadata for all studies published in the Image Data Resource

  yamlmetadatacsv+ 1studies

  Python

  •24•14•32•6•Updated Dec 19, 2024Dec 19, 2024

• idr0161-yayon-thymus

  Public
  0•0•0•0•Updated Dec 18, 2024Dec 18, 2024

• idr0163-greenwald-tnbc

  Public
  Python

  •0•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• repos

  Public
  A super-module of all the repositories used for building the IDR

  git

  Shell

  •2•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• vocabulary

  Public
  2•0•0•0•Updated Dec 12, 2024Dec 12, 2024

• deployment

  Public
  Deployment infrastructure for the Image Data Resource

  infrastructureansibleinventory+ 1playbook

  Python

  •

  BSD 2-Clause "Simplified" License

  •14•13•18•3•Updated Dec 12, 2024Dec 12, 2024

• idr.openmicroscopy.org

  Public
  Source for the IDR static website.

  jekyll-siteidr

  HTML

  •

  Creative Commons Attribution 4.0 International

  •16•4•9•3•Updated Dec 12, 2024Dec 12, 2024

• idr0092-ostrop-organoid

  Public
  Python

  •3•0•0•1•Updated Dec 11, 2024Dec 11, 2024

• ome-ngff-samples

  Public
  A catalog of all public OME-NGFF representative samples derived from IDR data

  idrzarrngff

  HTML

  •3•0•3•1•Updated Nov 28, 2024Nov 28, 2024

• idr-gallery

  Public
  JavaScript

  •

  GNU Affero General Public License v3.0

  •15•1•5•2•Updated Nov 26, 2024Nov 26, 2024

• idr0155-fu-alphasynuclein

  Public
  Python

  •0•0•0•0•Updated Nov 14, 2024Nov 14, 2024

• idr0158-radtke-lymphoma

  Public
  Python

  •0•0•0•0•Updated Nov 4, 2024Nov 4, 2024

• idr0138-lohoff-seqfish

  Public
  Python

  •0•0•0•0•Updated Sep 16, 2024Sep 16, 2024

• idr0157-peters-bryophytes

  Public
  0•0•0•0•Updated Sep 6, 2024Sep 6, 2024

• idr-utils

  Public
  Utility scripts for managing IDR submissions

  Python

  •

  BSD 2-Clause "Simplified" License

  •6•2•5•12•Updated Jul 30, 2024Jul 30, 2024

• bioformats

  Public
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

  Java

  •

  GNU General Public License v2.0

  •243•0•2•0•Updated Jul 3, 2024Jul 3, 2024

• idr-log-analysis

  Public
  Log analysis and visualisation for the Image Data Resource (IDR)

  Dockerfile

  •2•0•0•1•Updated Jun 28, 2024Jun 28, 2024

• mkngff_upgrade_scripts

  Public
  PLpgSQL

  •0•0•0•0•Updated Jun 18, 2024Jun 18, 2024

• idr0133-dahlin-cellpainting

  Public
  Python

  •0•0•0•0•Updated May 31, 2024May 31, 2024

• idr0125-way-cellpainting

  Public
  Shell

  •1•0•2•0•Updated May 1, 2024May 1, 2024

• omero-mkngff

  Public
  Plugin to swap OMERO filesets with NGFF

  Python

  •

  GNU General Public License v2.0

  •2•0•2•1•Updated Apr 26, 2024Apr 26, 2024

• idr0070-kerwin-hdbr

  Public
  Python

  •3•0•0•1•Updated Apr 22, 2024Apr 22, 2024

• idr0154-queen-hdbr

  Public
  0•0•0•0•Updated Mar 8, 2024Mar 8, 2024

• aspera-client-docker

  Public
  Docker image for downloading IDR datasets

  Dockerfile

  •11•1•0•0•Updated Jan 31, 2024Jan 31, 2024

• idr0094-ellinger-sarscov2

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •4•1•0•0•Updated Oct 30, 2023Oct 30, 2023

• idr0114-lindsay-hdbr

  Public
  Python

  •1•0•1•0•Updated Oct 30, 2023Oct 30, 2023

• idr0143-herbst-coculture

  Public
  Python

  •0•0•0•0•Updated Oct 16, 2023Oct 16, 2023

• idr0150-friedman-cafs

  Public
  Python

  •0•0•0•0•Updated Oct 13, 2023Oct 13, 2023

• idr0147-kuo-kidney3d

  Public
  0•0•0•0•Updated Sep 15, 2023Sep 15, 2023