IPMI group at the UKE

All

26 repositories

CTC-HiL
Public
Python
•0•0•0•0•Updated Dec 16, 2024Dec 16, 2024
4d-cbct-mc
Public
Monte Carlo simulation of (4D) cone beam computed tomography
deep-learning medical-imaging monte-carlo-simulation medical-image-processing computed-tomography medical-image-analysis
C
•1•7•0•1•Updated Dec 10, 2024Dec 10, 2024
NET_CUP
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Dec 4, 2024Dec 4, 2024
DARTS
Public
A Ca2+ microdomain analysis pipeline for spatio-temporal microscopy imaging
Python
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Apache License 2.0
•0•4•14•0•Updated Nov 25, 2024Nov 25, 2024
NFSegmentationPipeline
Public
Neurofibroma segmentation pipeline integrated in 3D Slicer via MONAI Label
Python
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MIT License
•0•0•0•0•Updated Nov 13, 2024Nov 13, 2024
Haematological-Single-Cell-Image-Classification
Public
Python
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MIT License
•0•0•0•0•Updated Oct 24, 2024Oct 24, 2024
sparsam
Public
Deep Learning on SPARSely Annotated Medical-data
sota deep-learning
Python
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MIT License
•1•6•0•2•Updated Aug 1, 2024Aug 1, 2024
vf-clustering
Public
Clustering of vector fields obtained from deformable image registration
0•0•0•0•Updated Jul 26, 2024Jul 26, 2024
respiratory-motion-prediction
Public
Python
•0•6•1•0•Updated Apr 24, 2024Apr 24, 2024
respiratory-signal-database
Public
Python
•0•3•0•0•Updated Apr 4, 2024Apr 4, 2024
DECO-DIP
Public
Python
•1•0•0•0•Updated Dec 21, 2023Dec 21, 2023
4d-cbct-boosting
Public
Python
•0•7•1•0•Updated Dec 12, 2023Dec 12, 2023
TDEntropyDeconvolution
Public
Spatio-temporal image restoration with entropy-based regularization for application to low-SNR fluorescence microscopy image series.
calcium-imaging microscopy deconvolution time-series
Python
•1•4•1•0•Updated Dec 1, 2023Dec 1, 2023
3d-pathology
Public
0•0•0•0•Updated Aug 5, 2023Aug 5, 2023
vroc
Public
Python
•0•0•0•0•Updated Jun 8, 2023Jun 8, 2023
4d-ct-artifact-inpainting
Public
Python
•1•0•0•0•Updated Jun 2, 2023Jun 2, 2023
ICNS-CoLD
Public
Matlab source code for the ICNS CoLD@2PM (Cortical Layer Discrimination in 2-Photon Microscopy data) project
machine-learning neuroscience
MATLAB
•1•1•0•0•Updated Sep 26, 2022Sep 26, 2022
inference-patch-sampling
Public
1•5•0•0•Updated Sep 22, 2022Sep 22, 2022
CAPUT
Public
Repository for the CAPUT dataset
motion registration wall deformation aneurysm
GNU General Public License v3.0
•2•4•0•0•Updated Sep 5, 2022Sep 5, 2022
DeepTICI
Public
Deep learning-based automated TICI (Thrombolysis In Cerebral Infarction) scoring for DSA-based assessment of mechanical thrombolysis response.
stroke angiography neuroradiology deep-learning
Python
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Other
•5•8•1•0•Updated Jun 9, 2022Jun 9, 2022
Jurkat_cell_segmentation
Public
First adoption of the reservoir paradigm for microscopy image data processing, here: T cell segmentation in live-cell Calcium image series.
machine-learning time-series image-segmentation reservoir-computing microscopy-images
Python
•1•1•0•0•Updated Jan 10, 2022Jan 10, 2022
VignettingCorrection
Public
Single image-based vignetting correction for improving the consistency of neural activity analysis in 2-photon functional microscopy
Python
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Other
•3•1•0•0•Updated Nov 29, 2021Nov 29, 2021
patch-performance
Public
Don't waste your time and money on inefficient patch-based inference!
deep-neural-networks deep-learning inference medical-image-processing
Python
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GNU General Public License v3.0
•1•6•0•0•Updated Oct 21, 2021Oct 21, 2021
multiscale
Public
Multi-scale CNNs for histopathology image segmentation
deep-learning image-segmentation convolutional-neural-networks
Python
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Other
•6•11•1•0•Updated Feb 28, 2021Feb 28, 2021
MPI-DVR
Public
3D Direct Volume Rendering (DVR) for real time-capable 3D visualization of Magnetic Particle Imaging (MPI) data
image-processing medical-imaging volume-rendering magnetic-particle-imaging 4d-visualization interventional-imaging
Python
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GNU General Public License v3.0
•0•3•1•0•Updated Sep 16, 2019Sep 16, 2019
gdl-fire-4d
Public
General deep learning-based fast image registration framework for clinical thoracic 4D CT data
deep-learning image-registration radiotherapy computed-tomography
Python
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GNU General Public License v3.0
•6•39•0•0•Updated Dec 13, 2018Dec 13, 2018