Skip to content

@Kortemme-Lab Kortemme-Lab

Change the repository type filter

All

    Repositories list

    29 repositories

    • local_protein_sequence_design

      Public
      Design a local part of a protein
      Python
      •
      MIT License
      •4•7•0•0•Updated Jan 12, 2023Jan 12, 2023

    • flex_ddG_analysis

      Public
      Python
      •3•0•0•0•Updated Aug 17, 2022Aug 17, 2022

    • flex_ddG_tutorial

      Public
      Python
      •
      MIT License
      •29•80•12•0•Updated Aug 17, 2022Aug 17, 2022

    • klab

      Public
      Kortemme Lab tools repository
      Python
      •
      MIT License
      •0•3•2•0•Updated Jul 25, 2022Jul 25, 2022

    • running_alphafold

      Public
      Python
      •0•0•0•0•Updated Oct 6, 2021Oct 6, 2021

    • wiki

      Public
      0•0•0•0•Updated Aug 26, 2021Aug 26, 2021

    • pull_into_place

      Public
      A rosetta pipeline to position important protein sidechains with sub-angstrom accuracy.
      Python
      •
      MIT License
      •2•5•5•0•Updated Jul 16, 2021Jul 16, 2021

    • protein_design_course_2021

      Public
      Jupyter Notebook
      •
      MIT License
      •1•4•0•0•Updated Jun 11, 2021Jun 11, 2021

    • protein_design_course_files

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Mar 31, 2021Mar 31, 2021

    • match_ligand_binding_sites

      Public
      Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.
      Python
      •5•11•1•0•Updated Dec 29, 2020Dec 29, 2020

    • loop_helix_loop_reshaping

      Public
      Reshape a part of the protein into a loop-helix-loop unit
      Python
      •2•7•0•0•Updated Dec 16, 2020Dec 16, 2020

    • protein_feature_analysis

      Public
      ProteinFeatureAnalyzer extracts, analyzes and visualizes features from protein structures.
      Python
      •
      MIT License
      •5•8•0•0•Updated Mar 14, 2020Mar 14, 2020

    • show_my_designs

      Public
      A GUI for visualizing and interacting with score vs rmsd plots.
      Python
      •
      Other
      •0•1•0•0•Updated Jan 8, 2020Jan 8, 2020

    • ksi

      Public
      Shell
      •0•0•0•0•Updated Jan 23, 2019Jan 23, 2019

    • buried_unsat_seq_recov

      Public
      Python
      •0•0•0•0•Updated Sep 8, 2018Sep 8, 2018

    • antiCRISPR_inputs

      Public
      Roff
      •0•0•0•0•Updated Aug 17, 2018Aug 17, 2018

    • ksi_inputs

      Public
      Roff
      •0•1•5•0•Updated May 15, 2018May 15, 2018

    • loop_modeling

      Public
      A loop modeling benchmark capture containing the benchmark dataset and benchmarked protocol captures.
      Python
      •
      MIT License
      •7•5•2•0•Updated Mar 8, 2018Mar 8, 2018

    • coupled_moves-tutorial

      Public
      Python
      •1•7•0•0•Updated Nov 28, 2017Nov 28, 2017

    • cas9_inputs

      Public
      Roff
      •0•0•0•0•Updated Nov 17, 2017Nov 17, 2017

    • parametric_scaffold_design

      Public
      PyRosetta scripts for parametric protein scaffold design
      Python
      •2•3•0•0•Updated Nov 4, 2017Nov 4, 2017

    • sequence-tolerance

      Public
      A sequence tolerance benchmark capture containing the benchmark dataset and benchmarked protocol captures.
      R
      •
      MIT License
      •0•1•6•0•Updated May 25, 2017May 25, 2017

    • kddg

      Public
      Database APIs for a database describing mutageneses, macromolecular complexes, experimental measurements, and computational methods. Used primarily for DDG predictions at present.
      Python
      •
      MIT License
      •0•2•0•0•Updated Feb 8, 2017Feb 8, 2017

    • python_cookiecutter

      Public
      Python
      •0•0•0•0•Updated Dec 7, 2016Dec 7, 2016

    • benchmark_set_construct

      Public
      Scripts for constructing data sets for benchmarks.
      Python
      •
      MIT License
      •0•0•0•0•Updated Nov 29, 2016Nov 29, 2016

    • qtop

      Public
      "Top"-like tools for monitoring usage on a SGE cluster
      Python
      •
      GNU General Public License v3.0
      •0•0•10•0•Updated Nov 5, 2016Nov 5, 2016

    • ddg

      Public
      A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.
      Python
      •
      MIT License
      •12•18•4•0•Updated Jan 31, 2016Jan 31, 2016

    • rosetta_dev_tools

      Public
      A set of tools to facilitate development of the Rosetta protein design suite.
      C++
      •
      GNU General Public License v3.0
      •0•0•1•0•Updated Dec 17, 2015Dec 17, 2015

    • covariation

      Public
      A covariation benchmark capture containing the benchmark dataset and benchmarked protocol captures.
      Python
      •
      MIT License
      •1•3•0•0•Updated Sep 16, 2015Sep 16, 2015