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@NTBEL Nano-Thermal Bioengineering Laboratory at UT Dallas

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    14 repositories

    • pharmacodynamic-response-models

      Public
      Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.
      Python
      •
      MIT License
      •2•1•0•0•Updated Jul 22, 2024Jul 22, 2024

    • diffusion-fit

      Public
      Extract estimates of dye/peptide diffusion coefficients and loss rates from a time-sequence of fluorescence images.
      Python
      •
      MIT License
      •0•0•3•0•Updated Apr 26, 2023Apr 26, 2023

    • PARM

      Public
      PAR2 Activation and calcium signaling Reaction Model in PySB
      systems-biologypysbnanoparticlespar2cell-signallingbiological-modelingbiological-modelscalcium-signallingmolecular-hyperthermia
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 24, 2023Feb 24, 2023

    • peptide-property-app

      Public
      Used peptides.py to predict peptide properties from the amino acid sequence.
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 21, 2023Feb 21, 2023

    • parm-streamlit-app

      Public
      A streamlit app to interact with PARM and test running the model.
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 21, 2023Feb 21, 2023

    • extracellular-models

      Public
      Reaction-diffusion models to simulate the dynamics of fluorescent dyes and peptides in the brain extracellular space implemented using the extracellular simulator in NEURON.
      Python
      •
      MIT License
      •1•0•0•0•Updated Jan 19, 2023Jan 19, 2023

    • lammps_output_analysis

      Public
      Python tools to parse, post-process, and analyze outputs from LAMMPS commands.
      Jupyter Notebook
      •
      MIT License
      •2•0•2•0•Updated Dec 7, 2022Dec 7, 2022

    • aunp-fragmentation-model-and-fitting

      Public archive
      Fragmentation distribution fitting and model analysis for our paper Kang et al. J. Phys. Chem. C 2021, 125, 48, 26718–26730
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Nov 9, 2022Nov 9, 2022

    • ecs-image-to-mcell

      Public
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Nov 3, 2022Nov 3, 2022

    • roi-plotter

      Public
      A streamlit app to read cell ROI data from csv files and plot the fluorescence traces.
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 18, 2022Oct 18, 2022

    • NP-array-heating-simulator

      Public
      0•0•0•0•Updated Mar 16, 2022Mar 16, 2022

    • GARM

      Public
      G-protein coupled receptor Activation Reaction Models
      MIT License
      •0•0•0•0•Updated Jan 27, 2022Jan 27, 2022

    • DIAMOND

      Public
      DIAMOND signal analysis
      MATLAB
      •
      MIT License
      •0•0•0•0•Updated Nov 17, 2021Nov 17, 2021

    • molechyperthermia_simulation_analysis

      Public
      0•0•0•0•Updated Feb 7, 2020Feb 7, 2020