Repositories list

• congeneric_synteny

  Public
  analysis of synteny across animals

  comparative-genomicssyntenyspeciation

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 27, 2024Dec 27, 2024

• HaploTC

  Public
  Target Capturing Genome-wide Loci in Marine Haplosclerids

  Creative Commons Zero v1.0 Universal

  •0•1•0•0•Updated Aug 28, 2024Aug 28, 2024

• 2Tethya_genomes

  Public
  The genome of the contractile demosponge Tethya wilhelma

  genomegenome-annotationgenome-analysis+ 4genome-assemblymetazoaporiferasponges

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 24, 2024Jun 24, 2024

• beauty_in_the_beast

  Public
  Raku

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated May 20, 2024May 20, 2024

• CalciteSea

  Public
  Data repository for Conci N., Griesshaber E., Rivera-Vicéns R., Schmahl W., Vargas S. and Wӧrheide G (2022) Molecular and mineral responses of corals grown under artificial Calcite Sea conditions.

  coralbiomineralizationscleractinia+ 1octocorallia

  0•0•0•0•Updated Feb 3, 2024Feb 3, 2024

• Aphrocallistes_vastus_genome

  Public
  Aphrocallistes vastus genome

  genomegenome-annotationgenome-analysis+ 3metazoabiomineralizationporifera

  Shell

  •

  Creative Commons Attribution Share Alike 4.0 International

  •0•1•0•0•Updated Oct 12, 2023Oct 12, 2023

• SONNE_Hexactinellida

  Public
  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 20, 2023Jul 20, 2023

• triangulation

  Public
  Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.

  bash-scriptproteomegenomes+ 6phylogenyhomology-searchorthologygenomes-comparisonrevbayesfull-genome

  R

  •

  GNU General Public License v3.0

  •0•5•0•0•Updated May 4, 2023May 4, 2023

• KeratoseMuseOMICS

  Public
  Data for Agne et al. Keratose sponge MuseOMICS: setting reference points in dictyoceratid demosponge phylogeny

  0•0•0•0•Updated Aug 17, 2022Aug 17, 2022

• TransPi

  Public
  TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

  rna-seqannotationnextflow+ 6assemblytranscriptomicsdenovo-assemblyrna-seq-pipelinenextflow-pipelinenon-model-species

  Nextflow

  •

  Other

  •15•26•26•0•Updated Jan 2, 2022Jan 2, 2022

• TransPi_paper

  Public
  TransPi - Supplementary files

  HTML

  •0•0•0•0•Updated Dec 13, 2021Dec 13, 2021

• PlasticsSponge

  Public
  Sponges as bioindicators for microparticulate pollutants

  R

  •1•0•0•1•Updated Jun 7, 2020Jun 7, 2020

• PlasticsBacteria

  Public
  R

  •1•0•0•0•Updated Feb 11, 2020Feb 11, 2020

• Soft-Sponges-Tricky-Tree

  Public
  Data sets of "Soft Sponges with Tricky Tree: On the Phylogeny of Dictyoceratid Sponges" by Erpenbeck D, Galitz A,Ekins M, Cook SdC, van Soest RWM, Hooper JNA, and Wörheide G. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper.

  0•0•0•0•Updated Dec 10, 2019Dec 10, 2019

• Molecular-biodiversity-of-Red-Sea-demosponges.

  Public
  Data set repository of Erpenbeck et al. (2016), Marine Pollution Bulletin 105:507-515. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper.

  0•0•0•0•Updated Dec 10, 2019Dec 10, 2019

• A-short-LSU-rRNA-fragment-as-a-standard-marker-for-integrative-taxonomy-in-calcareous-sponges

  Public
  Alignment, secondary structure files, trees & more of Voigt & Wörheide (2016) Organisms Diversity & Evolution 16:53-64. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper.

  0•0•0•0•Updated Dec 10, 2019Dec 10, 2019

• Spongillida_Minimalist_Barcodes

  Public
  Repository for: Minimalist barcodes for sponges: a case study classifying African freshwater Spongillida. Authors: Dirk Erpenbeck, Markus Steiner, Astrid Schuster, Martin J. Genner, Renata Manconi, Roberto Pronzato, Bernhard Ruthensteiner, Didier van den Spiegel, Rob W.M. van Soest, and Gert Wörheide

  0•0•0•0•Updated Jan 15, 2019Jan 15, 2019

• mitoclocks2018

  Public
  Roff

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jul 30, 2018Jul 30, 2018

• Montipora_digitata_resources

  Public
  Companion repository for González-Pech et al.

  R

  •0•0•0•0•Updated Jun 22, 2017Jun 22, 2017

• bio-phyta

  Public
  Ruby

  •

  GNU Lesser General Public License v3.0

  •1•2•1•0•Updated Dec 7, 2011Dec 7, 2011

• Kingdom-Assignment

  Public
  A Ruby gem to parse BLASTplus XML output and annotate higher rank taxonomy

  Ruby

  •

  GNU Lesser General Public License v3.0

  •0•1•0•0•Updated Oct 17, 2011Oct 17, 2011

• Annotate-GFF

  Public
  Add annotations to a GFF file

  Ruby

  •

  GNU Lesser General Public License v3.0

  •1•3•0•0•Updated Jun 7, 2011Jun 7, 2011

• Kingdom-Extraction

  Public
  Ruby

  •

  GNU Lesser General Public License v3.0

  •0•1•0•0•Updated Apr 21, 2011Apr 21, 2011

• Kingdom-Splitter

  Public
  A Ruby gem to sort out bacterial, archaeal and viral contaminations from genomic data.

  Ruby

  •

  GNU Lesser General Public License v3.0

  •0•1•0•0•Updated Apr 21, 2011Apr 21, 2011