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    47 repositories

    • phema-hapi-fhir

      Public
      PhEMA HAPI FHIR JPA Server
      Java
      •
      Apache License 2.0
      •0•0•0•3•Updated Aug 1, 2024Aug 1, 2024

    • vsac_to_omop

      Public
      This is a prototype application which transfers VSAC value sets to OMOP repository as concept sets
      Java
      •0•3•2•2•Updated Apr 14, 2023Apr 14, 2023

    • cql-on-omop

      Public
      Runs CQL phenotype definitions against an OMOP repository
      elmphenotypescohortsomopohdsi-webapi
      Java
      •2•12•14•4•Updated Apr 14, 2023Apr 14, 2023

    • omoponfhir-extractor

      Public
      Tool for extracting OMOP data as FHIR resource using OMOP on FHIR.
      JavaScript
      •1•1•0•3•Updated Mar 3, 2023Mar 3, 2023

    • phema-workbench-deploy

      Public
      Deployment config for PhEMA Workbench.
      Shell
      •0•2•1•0•Updated Jan 25, 2023Jan 25, 2023

    • phema-workbench-app

      Public
      The parts of the PhEMA Workbench that run in the browser.
      TypeScript
      •
      Apache License 2.0
      •0•0•6•19•Updated Jan 7, 2023Jan 7, 2023

    • phema-author

      Public
      PhEMA Authoring Tool
      JavaScript
      •
      Apache License 2.0
      •0•4•7•15•Updated Jan 5, 2023Jan 5, 2023

    • phekb-export

      Public
      PheKB data exporter and viewer
      TypeScript
      •
      MIT License
      •0•0•0•12•Updated Jan 5, 2023Jan 5, 2023

    • ohdsi-json-schema-generator

      Public
      Java
      •0•0•0•1•Updated Nov 15, 2022Nov 15, 2022

    • phekb-phenotypes

      Public
      A selection of PheKB phenotypes represented using CQL and FHIR.
      JavaScript
      •1•3•0•0•Updated Sep 28, 2022Sep 28, 2022

    • phema-workbench-api

      Public
      The JAVA API for the PhEMA Workbench.
      Java
      •
      Apache License 2.0
      •1•2•12•3•Updated Jul 7, 2022Jul 7, 2022

    • phema-population-cql

      Public
      Simple tool for running a CQL library for a population of patients.
      fhircqlphenotyping
      JavaScript
      •0•0•0•1•Updated Jun 25, 2022Jun 25, 2022

    • phema.github.io

      Public
      The Phenotype Execution Modeling Architecture (PhEMA) project
      0•0•0•0•Updated Oct 26, 2021Oct 26, 2021

    • ohdsi-atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •139•0•0•0•Updated Jul 30, 2021Jul 30, 2021

    • ohdsi-webapi

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      TSQL
      •
      Apache License 2.0
      •168•0•0•0•Updated Jul 30, 2021Jul 30, 2021

    • terminology-manager

      Public
      Tool for converting terminology content in various formats into FHIR resources.
      TypeScript
      •0•0•0•0•Updated Apr 30, 2021Apr 30, 2021

    • elm-utils

      Public
      Some tools for working with ELM libraries.
      Java
      •0•0•1•0•Updated Apr 30, 2021Apr 30, 2021

    • thrombotic-event-phenotype

      Public
      TSQL
      •0•0•0•0•Updated Apr 27, 2021Apr 27, 2021

    • cqf-ruler

      Public
      CQL Measure Processing Component
      Java
      •
      Apache License 2.0
      •49•0•0•0•Updated Feb 23, 2021Feb 23, 2021

    • clinical_quality_language

      Public
      Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.
      Java
      •
      Apache License 2.0
      •124•0•0•0•Updated Jan 20, 2021Jan 20, 2021

    • CQL-Testing-Framework

      Public
      AHRQ-CDS CQL Testing Framework to allow CQL authors to more easily develop and run test cases for validating CQL-based CDS logic, regardless of how that CQL was developed (e.g., by hand, in the AT, etc). This is intended to be a developer-facing tool, run on the command-line; it has no server components.
      JavaScript
      •
      Apache License 2.0
      •8•0•0•0•Updated Nov 3, 2020Nov 3, 2020

    • cql_engine

      Public
      Clinical Quality Language Evaluation Engine
      Java
      •
      Apache License 2.0
      •45•0•0•0•Updated Jun 24, 2020Jun 24, 2020

    • vsac-wrapper

      Public
      A VSAC-enabled code service for the CoffeeScript CQL Execution project
      JavaScript
      •
      Apache License 2.0
      •7•0•0•0•Updated Apr 29, 2020Apr 29, 2020

    • DER

      Public
      REST services over a data element repository
      Java
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 1, 2020Apr 1, 2020

    • heart-failure-use-case

      Public
      Artifacts for the PhEMA heart failure use case phenotype
      HTML
      •0•1•0•0•Updated Jan 16, 2020Jan 16, 2020

    • omoponfhir-omopv5-jpabase

      Public
      OMOPv5 JPABase to support OMOPonFHIR
      Java
      •
      Apache License 2.0
      •4•0•0•0•Updated Jan 3, 2020Jan 3, 2020

    • omoponfhir-stu3-server

      Public
      OMOPonFHIR STU3 Server
      Java
      •
      Apache License 2.0
      •3•0•0•0•Updated Jan 3, 2020Jan 3, 2020

    • omoponfhir-main

      Public
      Main OMOPonFHIR Settings
      Dockerfile
      •
      Apache License 2.0
      •15•0•0•0•Updated Jan 1, 2020Jan 1, 2020

    • cql_execution_service

      Public
      Clinical Quality Language Execution Service
      Java
      •7•0•0•0•Updated Jan 1, 2020Jan 1, 2020

    • deployments

      Public
      Kubernetes cluster configs to use with Flux.
      Smarty
      •0•0•0•0•Updated Nov 21, 2019Nov 21, 2019